Detailed information of Aala_g2099.t1 in Alatina alata

Genomic Location: :...
NR annotation: ALO79289.1, Y box-binding protein 1, partial [Carassius auratus red var. x Cyprinus carpio]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
B5DE31Y-box-binding protein 1 OS=Danio rerio OX=7955 GN=ybx1 PE=1 SV=1
Q06066Y-box-binding protein 1 OS=Gallus gallus OX=9031 GN=YBX1 PE=2 SV=1
P62960Y-box-binding protein 1 OS=Mus musculus OX=10090 GN=Ybx1 PE=1 SV=3
Gene familySubfamily
Transcription Factors FamilyCSD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF00313CSD'Cold-shock' DNA-binding domainDomainInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR002059DomainCold-shock protein, DNA-bindingInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR019844DomainCold-shock (CSD) domainInterproscan
IPR050181FamilyCold shock domain-containing proteinInterproscan
IPR011129DomainCold shock domainInterproscan
IPR001734FamilySodium/solute symporterInterproscan
IPR038377Homologous_superfamilySodium/glucose symporter superfamilyInterproscan
IPR051163FamilySodium:Solute Symporter (SSF)Interproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR037746FamilyProtein Dok-7Interproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11544COLD SHOCK DOMAIN CONTAINING PROTEINSInterproscan
PTHR42985SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTERInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR21636PROTEIN DOK-7Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0006814Biological Processsodium ion transportInterproscan
GO:0015293Molecular Functionsymporter activityInterproscan
GO:0007528Biological Processneuromuscular junction developmentInterproscan
GO:0019901Molecular Functionprotein kinase bindingInterproscan
GO:0061098Biological Processpositive regulation of protein tyrosine kinase activityInterproscan

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