Detailed information of Aala_g2102.t1 in Alatina alata

Genomic Location: :...
NR annotation: GFS23916.1, transposon Ty3-I Gag-Pol polyprotein [Elysia marginata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q10126Putative uncharacterized transposon-derived protein F52C9.6 OS=Caenorhabditis elegans OX=6239 GN=F52C9.6 PE=5 SV=1
Q5Z6G5DEAD-box ATP-dependent RNA helicase 35B OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0697200 PE=3 SV=1
Q9SQV1DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1
Gene familySubfamily
Transcription Factors FamilyTHAP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF05485THAPTHAP domainDomainInterproscan
PF13359DDE_Tnp_4DDE superfamily endonucleaseDomainInterproscan
PF03564DUF1759Protein of unknown function (DUF1759)FamilyInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00226DnaJDnaJ domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR014014DomainRNA helicase, DEAD-box type, Q motifInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR006612DomainTHAP-type zinc fingerInterproscan
IPR027806DomainHarbinger transposase-derived nuclease domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR005312FamilyProtein of unknown function DUF1759Interproscan
IPR050778FamilyCueball/EGF/LRP/NidogenInterproscan
IPR011042Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan
IPR039586FamilyCilia- and flagella-associated protein 46Interproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR036595Homologous_superfamilyAlpha-macroglobulin, receptor-binding domain superfamilyInterproscan
IPR018253Conserved_siteDnaJ domain, conserved siteInterproscan
IPR044713FamilyDnaJ homolog subfamily A member 1/2-likeInterproscan
IPR001623DomainDnaJ domainInterproscan
IPR036869Homologous_superfamilyChaperone J-domain superfamilyInterproscan
IPR036410Homologous_superfamilyHeat shock protein DnaJ, cysteine-rich domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47958ATP-DEPENDENT RNA HELICASE DBP3Interproscan
PTHR23080THAP DOMAIN PROTEINInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR46513VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATEDInterproscan
PTHR15977CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46Interproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR43888DNAJ-LIKE-2, ISOFORM A-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0035082Biological Processaxoneme assemblyInterproscan
GO:0060294Biological Processcilium movement involved in cell motilityInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006457Biological Processprotein foldingInterproscan
GO:0030544Molecular FunctionHsp70 protein bindingInterproscan
GO:0042026Biological Processprotein refoldingInterproscan
GO:0051087Molecular Functionprotein-folding chaperone bindingInterproscan

TOP