Detailed information of Aala_g211.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_047493424.1, uncharacterized protein LOC125042007 [Penaeus chinensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9NW08DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens OX=9606 GN=POLR3B PE=1 SV=2
P59470DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus OX=10090 GN=Polr3b PE=1 SV=2
Q54IZ9DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium discoideum OX=44689 GN=polr3b PE=3 SV=1
Gene familySubfamily
Transcription Factors Familyzf-C2H2
Transcription Factors FamilyTHAP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00335TetraspaninTetraspanin familyFamilyInterproscan
PF03184DDE_1DDE superfamily endonucleaseFamilyInterproscan
PF05485THAPTHAP domainDomainInterproscan
PF04561RNA_pol_Rpb2_2RNA polymerase Rpb2, domain 2DomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF14291DUF4371Domain of unknown function (DUF4371)FamilyInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF00514ArmArmadillo/beta-catenin-like repeatRepeatInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000195DomainRab-GAP-TBC domainInterproscan
IPR050302FamilyRab GTPase-activating TBC domain-containing proteinInterproscan
IPR035969Homologous_superfamilyRab-GAP-TBC domain superfamilyInterproscan
IPR018503Conserved_siteTetraspanin, conserved siteInterproscan
IPR018499FamilyTetraspanin/PeripherinInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR050863FamilyCentromere and Transposable Element-Derived ProteinInterproscan
IPR004875DomainDDE superfamily endonuclease domainInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR006612DomainTHAP-type zinc fingerInterproscan
IPR007642DomainRNA polymerase Rpb2, domain 2Interproscan
IPR037034Homologous_superfamilyRNA polymerase Rpb2, domain 2 superfamilyInterproscan
IPR015712FamilyDNA-directed RNA polymerase, subunit 2Interproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR025398DomainDomain of unknown function DUF4371Interproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR000225RepeatArmadilloInterproscan
IPR043379FamilyAnkyrin and armadillo repeat-containing proteinInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47219RAB GTPASE-ACTIVATING PROTEIN 1-LIKEInterproscan
PTHR19282TETRASPANINInterproscan
PTHR19303TRANSPOSONInterproscan
PTHR16146INTELECTINInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2Interproscan
PTHR45749-Interproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR46464ANK_REP_REGION DOMAIN-CONTAINING PROTEINInterproscan
PTHR34723PROTEIN CBG17025Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0070492Molecular Functionoligosaccharide bindingInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0001056Molecular FunctionRNA polymerase III activityInterproscan
GO:0005666Cellular ComponentRNA polymerase III complexInterproscan
GO:0032549Molecular Functionribonucleoside bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06497CD63, MLA1, TSPAN30; CD63 antigen-Chromosome and associated proteinsko03036deepkoala
CD moleculesko04090deepkoala

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