Detailed information of Aala_g2111.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_047136494.1, zinc finger SWIM domain-containing protein 8 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9VWN9Zinc finger SWIM domain-containing protein 8 homolog OS=Drosophila melanogaster OX=7227 GN=Dora PE=2 SV=2
A7E305Zinc finger SWIM domain-containing protein 8 OS=Bos taurus OX=9913 GN=ZSWIM8 PE=2 SV=1
Q3UHH1Zinc finger SWIM domain-containing protein 8 OS=Mus musculus OX=10090 GN=Zswim8 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00665rveIntegrase core domainDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF01541GIY-YIGGIY-YIG catalytic domainDomainInterproscan
PF21055ZSWIM4-8_CZSWIM4-8, C-terminalRepeatInterproscan
PF00028CadherinCadherin domainDomainInterproscan
PF02460PatchedPatched familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000305DomainGIY-YIG endonucleaseInterproscan
IPR035901Homologous_superfamilyGIY-YIG endonuclease superfamilyInterproscan
IPR048370DomainZSWIM4-8, C-terminalInterproscan
IPR002126DomainCadherin-likeInterproscan
IPR020894Conserved_siteCadherin conserved siteInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR003392FamilyProtein patched/dispatchedInterproscan
IPR000731DomainSterol-sensing domainInterproscan
IPR052081FamilyDispatched hedgehog regulatorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37984PROTEIN CBG26694Interproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR22619ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6Interproscan
PTHR24026FAT ATYPICAL CADHERIN-RELATEDInterproscan
PTHR33198ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR45951PROTEIN DISPATCHED-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0031462Cellular ComponentCul2-RING ubiquitin ligase complexInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0050839Molecular Functioncell adhesion molecule bindingInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan
GO:0007224Biological Processsmoothened signaling pathwayInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K25207ZSWIM8; zinc finger SWIM domain-containing protein 8-Ubiquitin systemko04121deepkoala

TOP