Gene detail

Detailed information of Aala_g2120.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_026818328.1, retinal homeobox protein Rx3-like [Rhopalosiphum maidis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q96QS3	Homeobox protein ARX OS=Homo sapiens OX=9606 GN=ARX PE=1 SV=1
O35085	Homeobox protein ARX OS=Mus musculus OX=10090 GN=Arx PE=1 SV=3
A6YP92	Homeobox protein ARX OS=Rattus norvegicus OX=10116 GN=Arx PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00867	XPG_I	XPG I-region	Family	Interproscan
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00168	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005343	Family	Nucleolar complex protein 2	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR033133	Domain	Pumilio homology domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR006086	Domain	XPG-I domain	Interproscan
IPR006084	Family	XPG/Rad2 endonuclease	Interproscan
IPR029060	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR050649	Family	Paired Homeobox Transcription Factors	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR000008	Domain	C2 domain	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12687	NUCLEOLAR COMPLEX 2 AND RAD4-RELATED	Interproscan
PTHR33332	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR11081	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan
PTHR24329	HOMEOBOX PROTEIN ARISTALESS	Interproscan
PTHR10024	SYNAPTOTAGMIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0030690	Cellular Component	Noc1p-Noc2p complex	Interproscan
GO:0030691	Cellular Component	Noc2p-Noc3p complex	Interproscan
GO:0042273	Biological Process	ribosomal large subunit biogenesis	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan
GO:0000287	Molecular Function	magnesium ion binding	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008409	Molecular Function	5'-3' exonuclease activity	Interproscan
GO:0017108	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0030145	Molecular Function	manganese ion binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000149	Molecular Function	SNARE binding	Interproscan
GO:0001786	Molecular Function	phosphatidylserine binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005544	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0014059	Biological Process	regulation of dopamine secretion	Interproscan
GO:0017156	Biological Process	calcium-ion regulated exocytosis	Interproscan
GO:0017158	Biological Process	regulation of calcium ion-dependent exocytosis	Interproscan
GO:0019905	Molecular Function	syntaxin binding	Interproscan
GO:0030276	Molecular Function	clathrin binding	Interproscan
GO:0048488	Biological Process	synaptic vesicle endocytosis	Interproscan
GO:0048791	Biological Process	calcium ion-regulated exocytosis of neurotransmitter	Interproscan
GO:0070382	Cellular Component	exocytic vesicle	Interproscan
GO:0071277	Biological Process	cellular response to calcium ion	Interproscan