Gene detail

Detailed information of Aala_g2137.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAH1254971.1, TAF1C [Branchiostoma lanceolatum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
A2ATU0	2-oxoadipate dehydrogenase complex component E1 OS=Mus musculus OX=10090 GN=Dhtkd1 PE=1 SV=1
Q4KLP0	2-oxoadipate dehydrogenase complex component E1 OS=Rattus norvegicus OX=10116 GN=Dhtkd1 PE=2 SV=1
Q6P286	2-oxoadipate dehydrogenase complex component E1 OS=Xenopus laevis OX=8355 GN=dhtkd1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02779	Transket_pyr	Transketolase, pyrimidine binding domain	Domain	Interproscan
PF00676	E1_dh	Dehydrogenase E1 component	Family	Interproscan
PF00002	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF19438	LIN9_C	LIN9 C-terminal	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00067	p450	Cytochrome P450	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005475	Domain	Transketolase-like, pyrimidine-binding domain	Interproscan
IPR029061	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR011603	Family	2-oxoglutarate dehydrogenase E1 component	Interproscan
IPR001017	Domain	Dehydrogenase, E1 component	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR052035	Family	Zinc finger BED domain-containing	Interproscan
IPR000832	Family	GPCR, family 2, secretin-like	Interproscan
IPR017981	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR053231	Family	G-protein coupled receptor LN-TM7	Interproscan
IPR045831	Domain	LIN-9, C-terminal	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR052560	Family	RNA-directed DNA polymerase, mobile element	Interproscan
IPR017972	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR002401	Family	Cytochrome P450, E-class, group I	Interproscan
IPR036396	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR001128	Family	Cytochrome P450	Interproscan
IPR038801	Family	TATA box-binding protein-associated factor RNA polymerase I subunit C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23152	2-OXOGLUTARATE DEHYDROGENASE	Interproscan
PTHR46481	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan
PTHR45902	LATROPHILIN RECEPTOR-LIKE PROTEIN A	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR35450	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR36688	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR24289	STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE	Interproscan
PTHR15319	TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT C	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016624	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	Interproscan
GO:0030976	Molecular Function	thiamine pyrophosphate binding	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004508	Molecular Function	steroid 17-alpha-monooxygenase activity	Interproscan
GO:0042446	Biological Process	hormone biosynthetic process	Interproscan
GO:0042448	Biological Process	progesterone metabolic process	Interproscan
GO:0047442	Molecular Function	obsolete 17-alpha-hydroxyprogesterone aldolase activity	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0004497	Molecular Function	monooxygenase activity	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0001164	Molecular Function	RNA polymerase I core promoter sequence-specific DNA binding	Interproscan
GO:0001650	Cellular Component	fibrillar center	Interproscan
GO:0006360	Biological Process	transcription by RNA polymerase I	Interproscan