Detailed information of Aala_g2139.t1 in Alatina alata

Genomic Location: :...
NR annotation: ROT63998.1, putative RNA-directed DNA polymerase from mobile element jockey-like [Penaeus vannamei]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q10126Putative uncharacterized transposon-derived protein F52C9.6 OS=Caenorhabditis elegans OX=6239 GN=F52C9.6 PE=5 SV=1
O75112LIM domain-binding protein 3 OS=Homo sapiens OX=9606 GN=LDB3 PE=1 SV=2
Q8CI51PDZ and LIM domain protein 5 OS=Mus musculus OX=10090 GN=Pdlim5 PE=1 SV=4

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF13976gag_pre-integrsGAG-pre-integrase domainDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF00307CHCalponin homology (CH) domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00412LIMLIM domainDomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR025724DomainGAG-pre-integrase domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR000515DomainABC transporter type 1, transmembrane domain MetI-likeInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR050666FamilyEpithelial Splicing RegulatoryInterproscan
IPR036361Homologous_superfamilySAP domain superfamilyInterproscan
IPR026175FamilyMirror-image polydactyly gene 1 proteinInterproscan
IPR001715DomainCalponin homology domainInterproscan
IPR050540FamilyF-actin Monooxygenase MicalInterproscan
IPR036872Homologous_superfamilyCH domain superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR001781DomainZinc finger, LIM-typeInterproscan
IPR050604FamilyPDZ and LIM domain-containingInterproscan
IPR050149FamilyCollagen superfamilyInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR47481-Interproscan
PTHR47958ATP-DEPENDENT RNA HELICASE DBP3Interproscan
PTHR38585-Interproscan
PTHR13976HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATEDInterproscan
PTHR22089MIRROR-IMAGE POLYDACTYLY GENE 1 PROTEINInterproscan
PTHR23167CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATEDInterproscan
PTHR38681RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATEDInterproscan
PTHR46238REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR24214PDZ AND LIM DOMAIN PROTEIN ZASPInterproscan
PTHR46704CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR24023COLLAGEN ALPHAInterproscan
PTHR37984PROTEIN CBG26694Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0007276Biological Processgamete generationInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0043186Cellular ComponentP granuleInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0001725Cellular Componentstress fiberInterproscan
GO:0003779Molecular Functionactin bindingInterproscan
GO:0005912Cellular Componentadherens junctionInterproscan
GO:0030018Cellular ComponentZ discInterproscan
GO:0030036Biological Processactin cytoskeleton organizationInterproscan
GO:0031941Cellular Componentfilamentous actinInterproscan
GO:0051371Molecular Functionmuscle alpha-actinin bindingInterproscan
GO:0061061Biological Processmuscle structure developmentInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K24177SERINC4; serine incorporator 4-Membrane traffickingko04131deepkoala

TOP