Gene detail

Detailed information of Aala_g2142.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_030830344.1, uncharacterized protein K02A2.6-like [Strongylocentrotus purpuratus]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P03360	Gag-Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus OX=11636 GN=pol PE=1 SV=2
P42335	Inositol-trisphosphate 3-kinase B OS=Rattus norvegicus OX=10116 GN=Itpkb PE=1 SV=3
P27987	Inositol-trisphosphate 3-kinase B OS=Homo sapiens OX=9606 GN=ITPKB PE=1 SV=5

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF13843	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF01590	GAF	GAF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR029526	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR003018	Domain	GAF domain	Interproscan
IPR029016	Homologous_superfamily	GAF-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21301	REVERSE TRANSCRIPTASE	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR46599	PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11300	HMGN2; high-mobility group nucleosome-binding domain-containing protein 2	-	Chromosome and associated proteins	ko03036	deepkoala