Gene detail

Detailed information of Aala_g2147.t1 in Alatina alata

Genomic Location: :...
NR annotation: PFX13167.1, RNA-directed DNA polymerase from mobile element jockey [Stylophora pistillata]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q9YGN6	Single-strand selective monofunctional uracil DNA glycosylase OS=Xenopus laevis OX=8355 GN=smug1 PE=1 SV=1
Q59I47	Single-strand selective monofunctional uracil DNA glycosylase OS=Bos taurus OX=9913 GN=SMUG1 PE=2 SV=1
Q53HV7	Single-strand selective monofunctional uracil DNA glycosylase OS=Homo sapiens OX=9606 GN=SMUG1 PE=1 SV=2

Gene family	Subfamily
Transcription Factors Family	CBF

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02312	CBF_beta	Core binding factor beta subunit	Family	Interproscan
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF13832	zf-HC5HC2H_2	PHD-zinc-finger like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036552	Homologous_superfamily	Core-binding factor, beta subunit superfamily	Interproscan
IPR003417	Family	Core-binding factor, beta subunit	Interproscan
IPR036895	Homologous_superfamily	Uracil-DNA glycosylase-like domain superfamily	Interproscan
IPR039134	Family	Single-strand selective monofunctional uracil DNA glycosylase	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR027124	Family	SWR1-complex protein 5/Craniofacial development protein 1/2	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR050701	Family	Histone Modification Regulator	Interproscan
IPR034732	Domain	Extended PHD (ePHD) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13235	SINGLE-STRAND SELECTIVE MONOFUNCTIONAL URACIL DNA GLYCOSYLASE	Interproscan
PTHR23227	BUCENTAUR RELATED	Interproscan
PTHR21301	REVERSE TRANSCRIPTASE	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR33332	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR13793	PHD FINGER PROTEINS	Interproscan
PTHR46601	ULP_PROTEASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0000703	Molecular Function	oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	Interproscan
GO:0004844	Molecular Function	uracil DNA N-glycosylase activity	Interproscan
GO:0006284	Biological Process	base-excision repair	Interproscan
GO:0017065	Molecular Function	single-strand selective uracil DNA N-glycosylase activity	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0031491	Molecular Function	nucleosome binding	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan