Gene detail

Detailed information of Aala_g2165.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAC5393704.1, unnamed protein product [Mytilus coruscus]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q66H30	Gypsy retrotransposon integrase-like protein 1 OS=Rattus norvegicus OX=10116 GN=GIN1 PE=2 SV=1
Q5ZHX7	NADH-cytochrome b5 reductase 2 OS=Gallus gallus OX=9031 GN=CYB5R2 PE=2 SV=1
Q5BJ68	NADH-cytochrome b5 reductase 2 OS=Xenopus tropicalis OX=8364 GN=cyb5r2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00970	FAD_binding_6	Oxidoreductase FAD-binding domain	Domain	Interproscan
PF00175	NAD_binding_1	Oxidoreductase NAD-binding domain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF21044	CIP2A_N	CIP2A, N-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR052160	Family	Gypsy Retrotransposon Integrase-like	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR000305	Domain	GIY-YIG endonuclease	Interproscan
IPR035901	Homologous_superfamily	GIY-YIG endonuclease superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR008333	Domain	Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain	Interproscan
IPR017927	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR017938	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR039261	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan
IPR001433	Domain	Oxidoreductase FAD/NAD(P)-binding	Interproscan
IPR001834	Family	NADH:cytochrome b5 reductase-like	Interproscan
IPR001709	Domain	Flavoprotein pyridine nucleotide cytochrome reductase	Interproscan
IPR042510	Family	Protein CIP2A	Interproscan
IPR048701	Domain	CIP2A, N-terminal	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47266	ENDONUCLEASE-RELATED	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR21301	REVERSE TRANSCRIPTASE	Interproscan
PTHR19370	NADH-CYTOCHROME B5 REDUCTASE	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR23161	PROTEIN CIP2A	Interproscan
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0071949	Molecular Function	FAD binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00326	CYB5R; cytochrome-b5 reductase	EC:1.6.2.2	Amino sugar and nucleotide sugar metabolism	ko00520	deepkoala