Detailed information of Aala_g2187.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_053405128.1, uncharacterized protein LOC128558887 [Mercenaria mercenaria]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O35750Short stature homeobox protein 2 (Fragment) OS=Rattus norvegicus OX=10116 GN=Shox2 PE=2 SV=2
O15266Short stature homeobox protein OS=Homo sapiens OX=9606 GN=SHOX PE=1 SV=1
O60902Short stature homeobox protein 2 OS=Homo sapiens OX=9606 GN=SHOX2 PE=1 SV=4
Gene familySubfamily
Transcription Factors FamilyHomeobox
Ubiquitin FamilyE3|E3 activity|HECT

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00632HECTHECT-domain (ubiquitin-transferase)DomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF13855LRR_8Leucine rich repeatRepeatInterproscan
PF00046HomeodomainHomeodomainDomainInterproscan
PF03184DDE_1DDE superfamily endonucleaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR044611FamilyUbiquitin-protein ligase E3A/B/C-likeInterproscan
IPR000569DomainHECT domainInterproscan
IPR035983Homologous_superfamilyHECT, E3 ligase catalytic domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR001611RepeatLeucine-rich repeatInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR033228FamilyProtein SZT2Interproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR051775FamilyHomeobox domain-containing proteinInterproscan
IPR004875DomainDDE superfamily endonuclease domainInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR001752DomainKinesin motor domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036961Homologous_superfamilyKinesin motor domain superfamilyInterproscan
IPR027640FamilyKinesin-like proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45700UBIQUITIN-PROTEIN LIGASE E3CInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR14918KICSTOR COMPLEX PROTEIN SZT2Interproscan
PTHR46601ULP_PROTEASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR24323CEH-10 HOMEODOMAIN-CONTAINING HOMOLOGInterproscan
PTHR47969CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005777Cellular ComponentperoxisomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000976Molecular Functiontranscription cis-regulatory region bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0003777Molecular Functionmicrotubule motor activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0007018Biological Processmicrotubule-based movementInterproscan
GO:0008017Molecular Functionmicrotubule bindingInterproscan
GO:0005875Cellular Componentmicrotubule associated complexInterproscan
GO:0007052Biological Processmitotic spindle organizationInterproscan
GO:0051231Biological Processspindle elongationInterproscan

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