Detailed information of Aala_g2211.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAG1696947.1, Transposable element Tcb2 transposase [Nymphon striatum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q2065514-3-3-like protein 2 OS=Caenorhabditis elegans OX=6239 GN=ftt-2 PE=1 SV=1
P4834714-3-3-like protein GF14 epsilon OS=Arabidopsis thaliana OX=3702 GN=GRF10 PE=1 SV=1
Q9S9Z814-3-3-like protein GF14 omicron OS=Arabidopsis thaliana OX=3702 GN=GRF11 PE=2 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF01541GIY-YIGGIY-YIG catalytic domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF0024414-3-314-3-3 proteinRepeatInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF13358DDE_3DDE superfamily endonucleaseDomainInterproscan
PF01498HTH_Tnp_Tc3_2TransposaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR038269Homologous_superfamilySCAN domain superfamilyInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR000305DomainGIY-YIG endonucleaseInterproscan
IPR035901Homologous_superfamilyGIY-YIG endonuclease superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR052343FamilyDiverse Retrotransposon and Effector-Associated ProteinInterproscan
IPR023410Domain14-3-3 domainInterproscan
IPR036815Homologous_superfamily14-3-3 domain superfamilyInterproscan
IPR000308Family14-3-3 proteinInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR052510FamilyOomycete RxLR EffectorInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR052338FamilyTransposase_5Interproscan
IPR038717DomainTc1-like transposase, DDE domainInterproscan
IPR002492DomainTransposase, Tc1-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37984PROTEIN CBG26694Interproscan
PTHR46888ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATEDInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR45749-Interproscan
PTHR46890NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATEDInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR1886014-3-3 PROTEINInterproscan
PTHR45895INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR23022TRANSPOSABLE ELEMENT-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0034613Biological Processprotein localizationInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006313Biological ProcessDNA transpositionInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14451mcl2; (3S)-malyl-CoA thioesteraseEC:3.1.2.30
Exosomeko04147deepkoala
Glyoxylate and dicarboxylate metabolismko00630deepkoala

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