Gene detail

Detailed information of Aala_g2221.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAJ8726122.1, hypothetical protein PYW07_000820 [Mythimna separata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P35072	Transposable element Tcb1 transposase OS=Caenorhabditis briggsae OX=6238 PE=3 SV=1
Q04202	Transposable element Tcb2 transposase OS=Caenorhabditis briggsae OX=6238 PE=3 SV=1
Q8CGS6	DNA polymerase theta OS=Mus musculus OX=10090 GN=Polq PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF05699	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF13358	DDE_3	DDE superfamily endonuclease	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF13976	gag_pre-integrs	GAG-pre-integrase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050938	Family	Collagen and Collagen-like Structural Proteins	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR002298	Family	DNA polymerase A	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR052717	Family	Vacuolar processing and transposase activity regulators	Interproscan
IPR008906	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR052338	Family	Transposase_5	Interproscan
IPR038717	Domain	Tc1-like transposase, DDE domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR025724	Domain	GAG-pre-integrase domain	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37456	SI:CH211-266K2.1	Interproscan
PTHR10133	DNA POLYMERASE I	Interproscan
PTHR46169	DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A	Interproscan
PTHR23022	TRANSPOSABLE ELEMENT-RELATED	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR47481	-	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006261	Biological Process	DNA-templated DNA replication	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0097681	Biological Process	double-strand break repair via alternative nonhomologous end joining	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07482	K07482; transposase, IS30 family	-	Replication and repair	-	deepkoala