Detailed information of Aala_g2227.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAG1681466.1, hypothetical protein GQR58_011849 [Nymphon striatum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P21574Y-box-binding protein 2-A OS=Xenopus laevis OX=8355 GN=ybx2-a PE=1 SV=3
P45441Y-box-binding protein 2-B OS=Xenopus laevis OX=8355 GN=ybx2-b PE=1 SV=2
B5DE31Y-box-binding protein 1 OS=Danio rerio OX=7955 GN=ybx1 PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyCSD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14893PNMAPNMAFamilyInterproscan
PF00313CSD'Cold-shock' DNA-binding domainDomainInterproscan
PF00008EGFEGF-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR048270DomainParaneoplastic antigen Ma-like, C-terminal domainInterproscan
IPR002059DomainCold-shock protein, DNA-bindingInterproscan
IPR019844DomainCold-shock (CSD) domainInterproscan
IPR011129DomainCold shock domainInterproscan
IPR050181FamilyCold shock domain-containing proteinInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR051022FamilyNotch Signaling and Cell Fate DeterminationInterproscan
IPR026630FamilyEPM2A-interacting protein 1/ZBED8-likeInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11544COLD SHOCK DOMAIN CONTAINING PROTEINSInterproscan
PTHR24049CRUMBS FAMILY MEMBERInterproscan
PTHR45913EPM2A-INTERACTING PROTEIN 1Interproscan
PTHR47018CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR35450REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007157Biological Processheterophilic cell-cell adhesion via plasma membrane cell adhesion moleculesInterproscan
GO:0032991Cellular Componentprotein-containing complexInterproscan
GO:0045197Biological Processestablishment or maintenance of epithelial cell apical/basal polarityInterproscan

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