Gene detail

Detailed information of Aala_g2286.t1 in Alatina alata

Genomic Location: :...
NR annotation: KXJ06463.1, putative RNA-directed DNA polymerase from transposon BS [Exaiptasia diaphana]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q3SA46	T-box transcription factor TBX20 OS=Xenopus tropicalis OX=8364 GN=tbx20 PE=2 SV=1
Q8AXW8	T-box transcription factor TBX20 OS=Xenopus laevis OX=8355 GN=tbx20 PE=2 SV=1
O43435	T-box transcription factor TBX1 OS=Homo sapiens OX=9606 GN=TBX1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00907	T-box	T-box	Domain	Interproscan
PF07677	A2M_recep	A-macroglobulin receptor binding domain	Domain	Interproscan
PF00125	Histone	Core histone H2A/H2B/H3/H4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000293	Domain	Channel forming colicin, C-terminal cytotoxic	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR036960	Homologous_superfamily	T-box superfamily	Interproscan
IPR046360	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR001699	Family	T-box transcription factor	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR036595	Homologous_superfamily	Alpha-macroglobulin, receptor-binding domain superfamily	Interproscan
IPR009048	Domain	Alpha-macroglobulin, receptor-binding	Interproscan
IPR000558	Family	Histone H2B	Interproscan
IPR007125	Domain	Histone H2A/H2B/H3	Interproscan
IPR009072	Homologous_superfamily	Histone-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47018	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR33332	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR11267	T-BOX PROTEIN-RELATED	Interproscan
PTHR23428	HISTONE H2B	Interproscan
PTHR23159	CENTROSOMAL PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0031640	Biological Process	killing of cells of another organism	Interproscan
GO:0050829	Biological Process	defense response to Gram-negative bacterium	Interproscan
GO:0140911	Molecular Function	pore-forming activity	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001708	Biological Process	cell fate specification	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0000786	Cellular Component	nucleosome	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0030527	Molecular Function	structural constituent of chromatin	Interproscan
GO:0046982	Molecular Function	protein heterodimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11252	H2B; histone H2B	-	Exosome	ko04147	deepkoala