Detailed information of Aala_g2288.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB4009886.1, ATP-dependent DNA helicase [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5ZLM0Parafibromin OS=Gallus gallus OX=9031 GN=CDC73 PE=2 SV=1
Q6P1J9Parafibromin OS=Homo sapiens OX=9606 GN=CDC73 PE=1 SV=1
Q8JZM7Parafibromin OS=Mus musculus OX=10090 GN=Cdc73 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00125HistoneCore histone H2A/H2B/H3/H4DomainInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF14291DUF4371Domain of unknown function (DUF4371)FamilyInterproscan
PF05699Dimer_Tnp_hAThAT family C-terminal dimerisation regionDomainInterproscan
PF05179CDC73_CRNA pol II accessory factor, Cdc73 family, C-terminalDomainInterproscan
PF09588YqaJYqaJ-like viral recombinase domainDomainInterproscan
PF04157EAP30EAP30/Vps36 familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000164FamilyHistone H3/CENP-AInterproscan
IPR009072Homologous_superfamilyHistone-foldInterproscan
IPR007125DomainHistone H2A/H2B/H3Interproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR025398DomainDomain of unknown function DUF4371Interproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR008906DomainHAT, C-terminal dimerisation domainInterproscan
IPR007852FamilyCdc73/ParafibrominInterproscan
IPR031336DomainCell division control protein 73, C-terminalInterproscan
IPR038103Homologous_superfamilyCell division control protein 73, C-terminal domain superfamilyInterproscan
IPR051703FamilyNF-kappa-B Signaling RegulatorInterproscan
IPR011335Homologous_superfamilyRestriction endonuclease type II-likeInterproscan
IPR019080DomainYqaJ viral recombinaseInterproscan
IPR011604Homologous_superfamilyPD-(D/E)XK endonuclease-like domain superfamilyInterproscan
IPR052035FamilyZinc finger BED domain-containingInterproscan
IPR052717FamilyVacuolar processing and transposase activity regulatorsInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR040608FamilySnf8/Vps36 familyInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR016689FamilyESCRT-2 complex, Snf8Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11426HISTONE H3Interproscan
PTHR47481-Interproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR45749-Interproscan
PTHR12466CDC73 DOMAIN PROTEINInterproscan
PTHR46609EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEINInterproscan
PTHR46481ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4Interproscan
PTHR37162HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATEDInterproscan
PTHR35450REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR46169DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM AInterproscan
PTHR12806EAP30 SUBUNIT OF ELL COMPLEXInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0046982Molecular Functionprotein heterodimerization activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0000993Molecular FunctionRNA polymerase II complex bindingInterproscan
GO:0006368Biological Processtranscription elongation by RNA polymerase IIInterproscan
GO:0016593Cellular ComponentCdc73/Paf1 complexInterproscan
GO:0032968Biological Processpositive regulation of transcription elongation by RNA polymerase IIInterproscan
GO:0034402Biological Processobsolete recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complexInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0000814Cellular ComponentESCRT II complexInterproscan
GO:0043328Biological Processprotein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathwayInterproscan
GO:0071985Biological Processmultivesicular body sorting pathwayInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11253H3; histone H3-Exosomeko04147deepkoala

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