Detailed information of Aala_g229.t1 in Alatina alata

Genomic Location: :...
NR annotation: EDO45558.1, predicted protein [Nematostella vectensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
B5DE31Y-box-binding protein 1 OS=Danio rerio OX=7955 GN=ybx1 PE=1 SV=1
Q06066Y-box-binding protein 1 OS=Gallus gallus OX=9031 GN=YBX1 PE=2 SV=1
P62960Y-box-binding protein 1 OS=Mus musculus OX=10090 GN=Ybx1 PE=1 SV=3
Gene familySubfamily
Transcription Factors FamilyCSD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF14893PNMAPNMAFamilyInterproscan
PF00313CSD'Cold-shock' DNA-binding domainDomainInterproscan
PF00022ActinActinFamilyInterproscan
PF03256ANAPC10Anaphase-promoting complex, subunit 10 (APC10)FamilyInterproscan
PF02017CIDE-NCIDE-N domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR002059DomainCold-shock protein, DNA-bindingInterproscan
IPR048270DomainParaneoplastic antigen Ma-like, C-terminal domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR011129DomainCold shock domainInterproscan
IPR050181FamilyCold shock domain-containing proteinInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR004000FamilyActin familyInterproscan
IPR020902Conserved_siteActin/actin-like conserved siteInterproscan
IPR043129Homologous_superfamilyATPase, nucleotide binding domainInterproscan
IPR004001Conserved_siteActin, conserved siteInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR036723Homologous_superfamilyAlpha-catenin/vinculin-like superfamilyInterproscan
IPR023211Homologous_superfamilyDNA polymerase, palm domain superfamilyInterproscan
IPR004939DomainAPC10/DOC domainInterproscan
IPR040099FamilyZinc finger ZZ-type and EF-hand domain-containing protein 1Interproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR003508DomainCIDE-N domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11544COLD SHOCK DOMAIN CONTAINING PROTEINSInterproscan
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR46601ULP_PROTEASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR11937ACTINInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR37162HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATEDInterproscan
PTHR31511PROTEIN CBG23764Interproscan
PTHR22772NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEINInterproscan
PTHR12306CELL DEATH ACTIVATOR CIDEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0006915Biological Processapoptotic processInterproscan
GO:0042981Biological Processregulation of apoptotic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K05692ACTB_G1; actin beta/gamma 1-Exosomeko04147deepkoala

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