Detailed information of Aala_g2325.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_020625703.1, probable ATP-dependent RNA helicase DDX41 [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9UJV9Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens OX=9606 GN=DDX41 PE=1 SV=2
Q91VN6Probable ATP-dependent RNA helicase DDX41 OS=Mus musculus OX=10090 GN=Ddx41 PE=1 SV=2
Q9LU46DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana OX=3702 GN=RH35 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03372Exo_endo_phosEndonuclease/Exonuclease/phosphatase familyDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00595PDZPDZ domainDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00175NAD_binding_1Oxidoreductase NAD-binding domain DomainInterproscan
PF04502Saf4_Yju2Saf4/Yju2 protein FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR001478DomainPDZ domainInterproscan
IPR051342FamilyPDZ domain-containing scaffold proteinInterproscan
IPR036034Homologous_superfamilyPDZ superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR001433DomainOxidoreductase FAD/NAD(P)-bindingInterproscan
IPR039261Homologous_superfamilyFerredoxin-NADP reductase (FNR), nucleotide-binding domainInterproscan
IPR001709DomainFlavoprotein pyridine nucleotide cytochrome reductaseInterproscan
IPR050871Family26S Proteasome and COP9 Signalosome ComponentsInterproscan
IPR003961DomainFibronectin type IIIInterproscan
IPR036116Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR007590FamilySaf4/Yju2 proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR19964MULTIPLE PDZ DOMAIN PROTEINInterproscan
PTHR47958ATP-DEPENDENT RNA HELICASE DBP3Interproscan
PTHR19384NITRIC OXIDE SYNTHASE-RELATEDInterproscan
PTHR1067826S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2Interproscan
PTHR44170PROTEIN SIDEKICKInterproscan
PTHR12111SPLICING FACTOR YJU2Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0009086Biological Processmethionine biosynthetic processInterproscan
GO:0010181Molecular FunctionFMN bindingInterproscan
GO:0030586Molecular Function[methionine synthase] reductase (NADPH) activityInterproscan
GO:0050660Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0050667Biological Processhomocysteine metabolic processInterproscan
GO:0000338Biological Processprotein deneddylationInterproscan
GO:0008180Cellular ComponentCOP9 signalosomeInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan
GO:0005684Cellular ComponentU2-type spliceosomal complexInterproscan
GO:0008380Biological ProcessRNA splicingInterproscan
GO:0071014Cellular Componentpost-mRNA release spliceosomal complexInterproscan

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