Detailed information of Aala_g2340.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_047124039.1, transcription elongation factor SPT5 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5ZI08Transcription elongation factor SPT5 OS=Gallus gallus OX=9031 GN=SUPT5H PE=2 SV=1
Q5R405Transcription elongation factor SPT5 OS=Pongo abelii OX=9601 GN=SUPT5H PE=2 SV=1
O00267Transcription elongation factor SPT5 OS=Homo sapiens OX=9606 GN=SUPT5H PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00467KOWKOW motifFamilyInterproscan
PF03439Spt5-NGNEarly transcription elongation factor of RNA pol II, NGN sectionFamilyInterproscan
PF05470eIF-3c_NEukaryotic translation initiation factor 3 subunit 8 N-terminusRepeatInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005824DomainKOWInterproscan
IPR039385DomainNGN domain, eukaryoticInterproscan
IPR014722Homologous_superfamilyLarge ribosomal subunit protein uL2, domain 2Interproscan
IPR036735Homologous_superfamilyNusG, N-terminal domain superfamilyInterproscan
IPR039659FamilyTranscription elongation factor SPT5Interproscan
IPR041973DomainSpt5, KOW domain repeat 1Interproscan
IPR024945DomainSpt5 C-terminal domainInterproscan
IPR041978DomainSpt5, KOW domain repeat 5Interproscan
IPR008991Homologous_superfamilyTranslation protein SH3-like domain superfamilyInterproscan
IPR041976DomainSpt5, KOW domain repeat 3Interproscan
IPR005100DomainNGN domainInterproscan
IPR008905DomainEukaryotic translation initiation factor 3 subunit C, N-terminal domainInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR002110RepeatAnkyrin repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR11125SUPPRESSOR OF TY 5Interproscan
PTHR46238REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR24203ANKYRIN REPEAT FAMILY PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006354Biological ProcessDNA-templated transcription elongationInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0006368Biological Processtranscription elongation by RNA polymerase IIInterproscan
GO:0032044Cellular ComponentDSIF complexInterproscan
GO:0032784Biological Processregulation of DNA-templated transcription elongationInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003743Molecular Functiontranslation initiation factor activityInterproscan
GO:0005852Cellular Componenteukaryotic translation initiation factor 3 complexInterproscan
GO:0006413Biological Processtranslational initiationInterproscan
GO:0031369Molecular Functiontranslation initiation factor bindingInterproscan

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