Detailed information of Aala_g2349.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_031572631.1, serine/arginine-rich splicing factor 3-like [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q3SZR8Serine/arginine-rich splicing factor 3 OS=Bos taurus OX=9913 GN=SRSF3 PE=2 SV=1
P84103Serine/arginine-rich splicing factor 3 OS=Homo sapiens OX=9606 GN=SRSF3 PE=1 SV=1
P84104Serine/arginine-rich splicing factor 3 OS=Mus musculus OX=10090 GN=Srsf3 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01142TruDtRNA pseudouridine synthase D (TruD)FamilyInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF13927Ig_3Immunoglobulin domainDomainInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00728Glyco_hydro_20Glycosyl hydrolase family 20, catalytic domainDomainInterproscan
PF14529Exo_endo_phos_2Endonuclease-reverse transcriptase DomainInterproscan
PF00075RNase_HRNase HDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR020119Conserved_sitePseudouridine synthase TruD, conserved siteInterproscan
IPR001656FamilyPseudouridine synthase, TruDInterproscan
IPR042214Homologous_superfamilyPseudouridine synthase, TruD, catalytic domainInterproscan
IPR011760DomainPseudouridine synthase, TruD, insertion domainInterproscan
IPR020103Homologous_superfamilyPseudouridine synthase, catalytic domain superfamilyInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR050907FamilySerine/Arginine-Rich Splicing FactorInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR052510FamilyOomycete RxLR EffectorInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR026630FamilyEPM2A-interacting protein 1/ZBED8-likeInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR015883DomainGlycoside hydrolase family 20, catalytic domainInterproscan
IPR017853Homologous_superfamilyGlycoside hydrolase superfamilyInterproscan
IPR025705FamilyBeta-hexosaminidaseInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR052560FamilyRNA-directed DNA polymerase, mobile elementInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR002156DomainRibonuclease H domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13326TRNA PSEUDOURIDINE SYNTHASE DInterproscan
PTHR23147SERINE/ARGININE RICH SPLICING FACTORInterproscan
PTHR24039FIBRILLIN-RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR45895INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR45913EPM2A-INTERACTING PROTEIN 1Interproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR22600BETA-HEXOSAMINIDASEInterproscan
PTHR36688ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0001522Biological Processpseudouridine synthesisInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0009451Biological ProcessRNA modificationInterproscan
GO:0009982Molecular Functionpseudouridine synthase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0016607Cellular Componentnuclear speckInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compoundsInterproscan
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0004563Molecular Functionbeta-N-acetylhexosaminidase activityInterproscan
GO:0005764Cellular ComponentlysosomeInterproscan
GO:0006689Biological Processganglioside catabolic processInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0030203Biological Processglycosaminoglycan metabolic processInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06176truD, PUS7; tRNA pseudouridine13 synthaseEC:5.4.99.27
Spliceosomeko03041deepkoala
Transfer RNA biogenesisko03016deepkoala

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