Gene detail

Detailed information of Aala_g235.t1 in Alatina alata

Genomic Location: :...
NR annotation: MCG8431352.1, hypothetical protein [Candidatus Omnitrophota bacterium]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
P27502	Polyprotein P3 OS=Rice tungro bacilliform virus (isolate Philippines) OX=10655 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	PC4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF10545	MADF_DNA_bdg	Alcohol dehydrogenase transcription factor Myb/SANT-like	Domain	Interproscan
PF02023	SCAN	SCAN domain	Domain	Interproscan
PF02229	PC4	Transcriptional Coactivator p15 (PC4)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001734	Family	Sodium/solute symporter	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR006578	Domain	MADF domain	Interproscan
IPR039353	Family	Transcription factor Adf-1	Interproscan
IPR003309	Domain	SCAN domain	Interproscan
IPR038269	Homologous_superfamily	SCAN domain superfamily	Interproscan
IPR045125	Family	RNA polymerase II transcriptional coactivator Sub1/Tcp4-like	Interproscan
IPR003173	Domain	Transcriptional coactivator p15 (PC4), C-terminal	Interproscan
IPR009044	Homologous_superfamily	ssDNA-binding transcriptional regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR38681	RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED	Interproscan
PTHR12243	MADF DOMAIN TRANSCRIPTION FACTOR	Interproscan
PTHR21301	REVERSE TRANSCRIPTASE	Interproscan
PTHR46888	ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED	Interproscan
PTHR47331	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR13215	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR	Interproscan
PTHR35450	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0060261	Biological Process	positive regulation of transcription initiation by RNA polymerase II	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan