Detailed information of Aala_g2356.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB3993669.1, Retrovirus-related Pol poly from transposon TNT 1-94 [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
P04146Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3
Q94HW2Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF01477PLATPLAT/LH2 domainDomainInterproscan
PF01541GIY-YIGGIY-YIG catalytic domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF05450NicastrinNicastrinFamilyInterproscan
PF05380Peptidase_A17Pao retrotransposon peptidase FamilyInterproscan
PF18701DUF5641Family of unknown function (DUF5641)DomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR052510FamilyOomycete RxLR EffectorInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR031160DomainF-BAR domainInterproscan
IPR001024DomainPLAT/LH2 domainInterproscan
IPR052970FamilyInner ear hair cell lipoxygenase homology domain-containing proteinInterproscan
IPR036392Homologous_superfamilyPLAT/LH2 domain superfamilyInterproscan
IPR035901Homologous_superfamilyGIY-YIG endonuclease superfamilyInterproscan
IPR000305DomainGIY-YIG endonucleaseInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR008710FamilyNicastrinInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR008042FamilyRetrotransposon, PaoInterproscan
IPR040676DomainDomain of unknown function DUF5641Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45895INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR45901PROTEIN CBG12474Interproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR21092NICASTRINInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR46238REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016485Biological Processprotein processingInterproscan

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