Gene detail

Detailed information of Aala_g2376.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_053167420.1, 52 kDa repressor of the inhibitor of the protein kinase-like [Hemicordylus capensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q13905	Rap guanine nucleotide exchange factor 1 OS=Homo sapiens OX=9606 GN=RAPGEF1 PE=1 SV=3
O77086	Guanine nucleotide-releasing factor 2 OS=Drosophila melanogaster OX=7227 GN=C3G PE=1 SV=4
Q8IS15	Ras guanine nucleotide exchange factor I OS=Dictyostelium discoideum OX=44689 GN=gefI PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|CUE

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF02845	CUE	CUE domain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00617	RasGEF	RasGEF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR040192	Family	CUE domain-containing protein 1	Interproscan
IPR003892	Domain	Ubiquitin system component CUE	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR002052	Conserved_site	DNA methylase, N-6 adenine-specific, conserved site	Interproscan
IPR001895	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR008937	Family	Ras-like guanine nucleotide exchange factor	Interproscan
IPR019804	Conserved_site	Ras guanine-nucleotide exchange factor, conserved site	Interproscan
IPR036964	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan
IPR000651	Domain	Ras-like guanine nucleotide exchange factor, N-terminal	Interproscan
IPR023578	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR21301	REVERSE TRANSCRIPTASE	Interproscan
PTHR13467	CUE DOMAIN CONTAINING PROTEIN 1	Interproscan
PTHR48032	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	Interproscan
PTHR23113	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005844	Cellular Component	obsolete polysome	Interproscan
GO:0006417	Biological Process	regulation of translation	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0032259	Biological Process	methylation	Interproscan
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007265	Biological Process	Ras protein signal transduction	Interproscan
GO:0043547	Biological Process	positive regulation of GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11663	ZNHIT1, VPS71; zinc finger HIT domain-containing protein 1	-	Renal cell carcinoma	ko05211	deepkoala
			Messenger RNA biogenesis	ko03019	deepkoala
			Chromosome and associated proteins	ko03036	deepkoala