Detailed information of Aala_g2387.t1 in Alatina alata

Genomic Location: :...
NR annotation: MCP4491938.1, DDE-type integrase/transposase/recombinase [Gammaproteobacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
P04146Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3
Q9ZT94Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF05285SDA1_domSDA1, conserved domainDomainInterproscan
PF08158SDA1_HEATSDA1, HEAT repeatRepeatInterproscan
PF18658zf-C2H2_12Spin-doc zinc-fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027357DomainDOCKER domainInterproscan
IPR026791FamilyDedicator of cytokinesisInterproscan
IPR052510FamilyOomycete RxLR EffectorInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR007949DomainSDA1, middle domainInterproscan
IPR012977DomainSDA1, N-terminalInterproscan
IPR027312FamilySda1Interproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR026630FamilyEPM2A-interacting protein 1/ZBED8-likeInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR040647DomainSPIN-DOC-like, zinc-fingerInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45653DEDICATOR OF CYTOKINESISInterproscan
PTHR45895INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR35450REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR12730HSDA/SDA1-RELATEDInterproscan
PTHR45913EPM2A-INTERACTING PROTEIN 1Interproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007264Biological Processsmall GTPase-mediated signal transductionInterproscan
GO:0031267Molecular Functionsmall GTPase bindingInterproscan
GO:0000055Biological Processribosomal large subunit export from nucleusInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0042273Biological Processribosomal large subunit biogenesisInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14856SDA1, SDAD1; protein SDA1-Ribosome biogenesisko03009deepkoala

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