Detailed information of Aala_g2393.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_012563910.2, uncharacterized protein LOC100204578 isoform X2 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q27IV2Protein Shroom3 OS=Xenopus laevis OX=8355 GN=shroom3 PE=2 SV=1
Q09JY9Protein Shroom2 OS=Xenopus tropicalis OX=8364 GN=shroom2 PE=2 SV=1
Q7TP36Protein Shroom2 OS=Rattus norvegicus OX=10116 GN=Shroom2 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF04371PAD_porphPorphyromonas-type peptidyl-arginine deiminaseFamilyInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF08687ASD2Apx/Shroom domain ASD2FamilyInterproscan
PF12816Vps8Golgi CORVET complex core vacuolar protein 8DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR007466FamilyPeptidyl-arginine deiminase, Porphyromonas-typeInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR014799DomainApx/Shrm Domain 2Interproscan
IPR027685FamilyShroom familyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR045111FamilyVacuolar protein sorting-associated protein Vps41/Vps8Interproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR025941DomainVacuolar protein sorting-associated protein 8, central domainInterproscan
IPR052035FamilyZinc finger BED domain-containingInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46238REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR31377AGMATINE DEIMINASE-RELATEDInterproscan
PTHR38681RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATEDInterproscan
PTHR47018CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR15012APICAL PROTEIN/SHROOM-RELATEDInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR12616VACUOLAR PROTEIN SORTING VPS41Interproscan
PTHR46481ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004668Molecular Functionprotein-arginine deiminase activityInterproscan
GO:0009446Biological Processputrescine biosynthetic processInterproscan
GO:0047632Molecular Functionagmatine deiminase activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0005912Cellular Componentadherens junctionInterproscan
GO:0007015Biological Processactin filament organizationInterproscan
GO:0016324Cellular Componentapical plasma membraneInterproscan
GO:0030864Cellular Componentcortical actin cytoskeletonInterproscan
GO:0043296Cellular Componentapical junction complexInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005770Cellular Componentlate endosomeInterproscan
GO:0006623Biological Processprotein targeting to vacuoleInterproscan
GO:0030897Cellular ComponentHOPS complexInterproscan
GO:0034058Biological Processendosomal vesicle fusionInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K20178VPS8; vacuolar protein sorting-associated protein 8-Membrane traffickingko04131deepkoala

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