Gene detail

Detailed information of Aala_g2394.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAI8485267.1, hypothetical protein Bbelb_370140 [Branchiostoma belcheri]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
P21328	RNA-directed DNA polymerase from mobile element jockey OS=Drosophila melanogaster OX=7227 GN=pol PE=1 SV=1
P21329	RNA-directed DNA polymerase from mobile element jockey OS=Drosophila funebris OX=7221 GN=jockeypol PE=1 SV=1
O73718	T-box transcription factor TBX3 (Fragment) OS=Gallus gallus OX=9031 GN=TBX3 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	T-box
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00907	T-box	T-box	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF09668	Asp_protease	Aspartyl protease	Family	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF07727	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046360	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR001699	Family	T-box transcription factor	Interproscan
IPR002070	Family	Transcription factor, Brachyury	Interproscan
IPR036960	Homologous_superfamily	T-box superfamily	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR026630	Family	EPM2A-interacting protein 1/ZBED8-like	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR019103	Domain	Aspartic peptidase, DDI1-type	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR052993	Family	Cilia- and flagella-associated protein 57	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR014010	Domain	REJ domain	Interproscan
IPR013103	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR11267	T-BOX PROTEIN-RELATED	Interproscan
PTHR33332	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR45913	EPM2A-INTERACTING PROTEIN 1	Interproscan
PTHR12917	ASPARTYL PROTEASE DDI-RELATED	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR32215	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57	Interproscan
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001708	Biological Process	cell fate specification	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24729	CFAP57, WDR65; cilia- and flagella-associated protein 57	-	Transcription factors	ko03000	deepkoala
			Exosome	ko04147	deepkoala
			Domain-containing proteins not elsewhere classified	ko04990	deepkoala