Detailed information of Aala_g2396.t1 in Alatina alata

Genomic Location: :...
NR annotation: GFW71619.1, tropomyosin [Trichonephila clavipes]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q03274Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1
O77695Beta-glucuronidase (Fragment) OS=Chlorocebus aethiops OX=9534 GN=GUSB PE=2 SV=1
O97524Beta-glucuronidase OS=Felis catus OX=9685 GN=GUSB PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00373FERM_MFERM central domainDomainInterproscan
PF18701DUF5641Family of unknown function (DUF5641)DomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00728Glyco_hydro_20Glycosyl hydrolase family 20, catalytic domainDomainInterproscan
PF03173CHB_HEXPutative carbohydrate binding domainDomainInterproscan
PF00261TropomyosinTropomyosinCoiled-coilInterproscan
PF02836Glyco_hydro_2_CGlycosyl hydrolases family 2, TIM barrel domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR019748DomainFERM central domainInterproscan
IPR014352Homologous_superfamilyFERM/acyl-CoA-binding protein superfamilyInterproscan
IPR035963Homologous_superfamilyFERM superfamily, second domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR040676DomainDomain of unknown function DUF5641Interproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR005819FamilyLinker histone H1/H5Interproscan
IPR029018Homologous_superfamilyBeta-hexosaminidase-like, domain 2Interproscan
IPR004866DomainChitobiase/beta-hexosaminidases, N-terminal domainInterproscan
IPR012291Homologous_superfamilyCBM2, carbohydrate-binding domain superfamilyInterproscan
IPR025705FamilyBeta-hexosaminidaseInterproscan
IPR015883DomainGlycoside hydrolase family 20, catalytic domainInterproscan
IPR008965Homologous_superfamilyCBM2/CBM3, carbohydrate-binding domain superfamilyInterproscan
IPR017853Homologous_superfamilyGlycoside hydrolase superfamilyInterproscan
IPR000533FamilyTropomyosinInterproscan
IPR006103DomainGlycoside hydrolase family 2, catalytic domainInterproscan
IPR052993FamilyCilia- and flagella-associated protein 57Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22955RETROTRANSPOSONInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR22600BETA-HEXOSAMINIDASEInterproscan
PTHR19269TROPOMYOSINInterproscan
PTHR35450REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR10066BETA-GLUCURONIDASEInterproscan
PTHR32215CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compoundsInterproscan
GO:0030247Molecular Functionpolysaccharide bindingInterproscan
GO:0004563Molecular Functionbeta-N-acetylhexosaminidase activityInterproscan
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0030246Molecular Functioncarbohydrate bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0030203Biological Processglycosaminoglycan metabolic processInterproscan
GO:0005884Cellular Componentactin filamentInterproscan
GO:0006936Biological Processmuscle contractionInterproscan
GO:0007015Biological Processactin filament organizationInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0004566Molecular Functionbeta-glucuronidase activityInterproscan
GO:0019391Biological Processobsolete glucuronoside catabolic processInterproscan

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