Detailed information of Aala_g2397.t1 in Alatina alata

Genomic Location: :...
NR annotation: PFX28382.1, Pogo transposable element with KRAB domain [Stylophora pistillata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P55113Zinc metalloproteinase nas-7 OS=Caenorhabditis elegans OX=6239 GN=nas-7 PE=2 SV=2
P55112Zinc metalloproteinase nas-4 OS=Caenorhabditis elegans OX=6239 GN=nas-4 PE=2 SV=4
P55115Zinc metalloproteinase nas-15 OS=Caenorhabditis elegans OX=6239 GN=nas-15 PE=2 SV=2
Gene familySubfamily
Transcription Factors FamilyHTH

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12774AAA_6Hydrolytic ATP binding site of dynein motor regionDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF05225HTH_psqhelix-turn-helix, Psq domainDomainInterproscan
PF01400AstacinAstacin (Peptidase family M12A)DomainInterproscan
PF03638TCRTesmin/TSO1-like CXC domain, cysteine-rich domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR026983FamilyDynein heavy chainInterproscan
IPR035699DomainDynein heavy chain, hydrolytic ATP-binding dynein motor regionInterproscan
IPR005819FamilyLinker histone H1/H5Interproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR052560FamilyRNA-directed DNA polymerase, mobile elementInterproscan
IPR007889DomainDNA binding HTH domain, Psq-typeInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR001506DomainPeptidase M12AInterproscan
IPR006026DomainPeptidase, metallopeptidaseInterproscan
IPR005172DomainCRC domainInterproscan
IPR033467DomainTesmin/TSO1-like CXC domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45703DYNEIN HEAVY CHAINInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR35450REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR36688ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR10127DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAININGInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0007018Biological Processmicrotubule-based movementInterproscan
GO:0030286Cellular Componentdynein complexInterproscan
GO:0045505Molecular Functiondynein intermediate chain bindingInterproscan
GO:0051959Molecular Functiondynein light intermediate chain bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan

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