Gene detail

Detailed information of Aala_g2403.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAI4894845.1, hypothetical protein NFI96_018288, partial [Prochilodus magdalenae]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q12830	Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens OX=9606 GN=BPTF PE=1 SV=3
Q9W0T1	Nucleosome-remodeling factor subunit NURF301 OS=Drosophila melanogaster OX=7227 GN=E(bx) PE=1 SV=2
Q1LUC3	Histone acetyltransferase KAT2B OS=Danio rerio OX=7955 GN=kat2b PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13358	DDE_3	DDE superfamily endonuclease	Domain	Interproscan
PF00439	Bromodomain	Bromodomain	Domain	Interproscan
PF01536	SAM_decarbox	Adenosylmethionine decarboxylase	Family	Interproscan
PF07727	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR038717	Domain	Tc1-like transposase, DDE domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR018359	Conserved_site	Bromodomain, conserved site	Interproscan
IPR001487	Domain	Bromodomain	Interproscan
IPR036427	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR038028	Family	Nucleosome-remodeling factor subunit BPTF	Interproscan
IPR048283	Family	S-adenosylmethionine decarboxylase-like	Interproscan
IPR016067	Homologous_superfamily	S-adenosylmethionine decarboxylase, core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013103	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33332	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR45975	NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF	Interproscan
PTHR11570	S-ADENOSYLMETHIONINE DECARBOXYLASE	Interproscan
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016589	Cellular Component	NURF complex	Interproscan
GO:0035064	Molecular Function	methylated histone binding	Interproscan
GO:0004014	Molecular Function	adenosylmethionine decarboxylase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006597	Biological Process	spermine biosynthetic process	Interproscan
GO:0008295	Biological Process	spermidine biosynthetic process	Interproscan