Detailed information of Aala_g241.t1 in Alatina alata

Genomic Location: :...
NR annotation: MCP4491938.1, DDE-type integrase/transposase/recombinase [Gammaproteobacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
P04146Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3
Q94HW2Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DDB1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13499EF-hand_7EF-hand domain pairDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF12012DUF3504Domain of unknown function (DUF3504)FamilyInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF05699Dimer_Tnp_hAThAT family C-terminal dimerisation regionDomainInterproscan
PF18139LSDAT_eukSLOG in TRPMFamilyInterproscan
PF03178CPSF_ACPSF A subunit regionRepeatInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002048DomainEF-hand domainInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR039857FamilyIntraflagellar transport protein 122/121 homologInterproscan
IPR052787FamilyMitochondrial antiviral-signaling domain-containing proteinInterproscan
IPR021893DomainDomain of unknown function DUF3504Interproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR052958FamilyInterferon-induced PKR regulatorInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR008906DomainHAT, C-terminal dimerisation domainInterproscan
IPR041491DomainTRPM, SLOG domainInterproscan
IPR050927FamilyTransient receptor potential cation channel MInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR050358FamilyRSE1/DDB1/CFT1/CPSF1Interproscan
IPR004871DomainCleavage/polyadenylation specificity factor, A subunit, C-terminalInterproscan
IPR029044Homologous_superfamilyNucleotide-diphospho-sugar transferasesInterproscan
IPR000772DomainRicin B, lectin domainInterproscan
IPR035992Homologous_superfamilyRicin B-like lectinsInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR35450REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR12764WD REPEAT DOMAIN-RELATEDInterproscan
PTHR21446DUF3504 DOMAIN-CONTAINING PROTEINInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR4628952 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATEDInterproscan
PTHR13800TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6Interproscan
PTHR10644DNA REPAIR/RNA PROCESSING CPSF FAMILYInterproscan
PTHR11675N-ACETYLGALACTOSAMINYLTRANSFERASEInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0030991Cellular Componentintraciliary transport particle AInterproscan
GO:0035721Biological Processintraciliary retrograde transportInterproscan
GO:0060271Biological Processcilium assemblyInterproscan
GO:0061512Biological Processprotein localization to ciliumInterproscan
GO:0097730Cellular Componentnon-motile ciliumInterproscan
GO:1905515Biological Processnon-motile cilium assemblyInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0005261Molecular Functionmonoatomic cation channel activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0070838Biological Processmetal ion transportInterproscan
GO:0098655Biological Processmonoatomic cation transmembrane transportInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0035861Cellular Componentsite of double-strand breakInterproscan
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0004653Molecular Functionpolypeptide N-acetylgalactosaminyltransferase activityInterproscan
GO:0005794Cellular ComponentGolgi apparatusInterproscan
GO:0006493Biological Processprotein O-linked glycosylationInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan

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