Detailed information of Aala_g2420.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_012553895.2, serine/threonine-protein kinase SMG1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
C5J7W8Serine/threonine-protein kinase SMG1 OS=Danio rerio OX=7955 GN=smg1 PE=2 SV=1
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
P04146Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF13961DUF4219Domain of unknown function (DUF4219)DomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR025314DomainDomain of unknown function DUF4219Interproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR035892Homologous_superfamilyC2 domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46114APPLE DOMAIN-CONTAINING PROTEINInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR35450REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan

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