Detailed information of Aala_g2426.t1 in Alatina alata

Genomic Location: :...
NR annotation: MCP4459908.1, hypothetical protein [Cytophagales bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q865W2E3 ubiquitin-protein ligase TRIM50 OS=Sus scrofa OX=9823 GN=TRIM50 PE=2 SV=1
Q810I2E3 ubiquitin-protein ligase TRIM50 OS=Mus musculus OX=10090 GN=Trim50 PE=1 SV=1
Q92021Nuclear factor 7, brain OS=Xenopus laevis OX=8355 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING
Ubiquitin FamilyE3|E3 activity RING|U-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00071RasRas familyDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF14893PNMAPNMAFamilyInterproscan
PF05380Peptidase_A17Pao retrotransposon peptidase FamilyInterproscan
PF13445zf-RING_UBOXRING-type zinc-fingerDomainInterproscan
PF03564DUF1759Protein of unknown function (DUF1759)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001806FamilySmall GTPaseInterproscan
IPR005225DomainSmall GTP-binding protein domainInterproscan
IPR050305FamilySmall GTPase superfamily, RabInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR048270DomainParaneoplastic antigen Ma-like, C-terminal domainInterproscan
IPR008042FamilyRetrotransposon, PaoInterproscan
IPR050143FamilyTripartite motif-containingInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR027370DomainZinc finger, RING-type, eukaryoticInterproscan
IPR003613DomainU-box domainInterproscan
IPR005312FamilyProtein of unknown function DUF1759Interproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47980LD44762PInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR24103E3 UBIQUITIN-PROTEIN LIGASE TRIMInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0006904Biological Processvesicle docking involved in exocytosisInterproscan
GO:0009306Biological Processprotein secretionInterproscan
GO:0017157Biological Processregulation of exocytosisInterproscan
GO:0043231Cellular Componentintracellular membrane-bounded organelleInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0045087Biological Processinnate immune responseInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan

TOP