Detailed information of Aala_g2427.t1 in Alatina alata

Genomic Location: :...
NR annotation: PFX27537.1, TNF receptor-associated factor 4 [Stylophora pistillata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P16989Y-box-binding protein 3 OS=Homo sapiens OX=9606 GN=YBX3 PE=1 SV=4
B5DE31Y-box-binding protein 1 OS=Danio rerio OX=7955 GN=ybx1 PE=1 SV=1
Q9JKB3Y-box-binding protein 3 OS=Mus musculus OX=10090 GN=Ybx3 PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilyCSD
Ubiquitin FamilyE3|E3 activity RING|RING
Ubiquitin FamilyE3|E3 activity RING|U-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00498FHAFHA domainFamilyInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF00097zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00313CSD'Cold-shock' DNA-binding domainDomainInterproscan
PF01085HH_signalHedgehog amino-terminal signalling domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011527DomainABC transporter type 1, transmembrane domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR000253DomainForkhead-associated (FHA) domainInterproscan
IPR018957DomainZinc finger, C3HC4 RING-typeInterproscan
IPR008984Homologous_superfamilySMAD/FHA domain superfamilyInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000515DomainABC transporter type 1, transmembrane domain MetI-likeInterproscan
IPR002059DomainCold-shock protein, DNA-bindingInterproscan
IPR050181FamilyCold shock domain-containing proteinInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR019844DomainCold-shock (CSD) domainInterproscan
IPR011129DomainCold shock domainInterproscan
IPR009045Homologous_superfamilyHedgehog signalling/DD-peptidase zinc-binding domain superfamilyInterproscan
IPR000320DomainHedgehog, N-terminal signalling domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23327RING FINGER PROTEIN 127Interproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR11544COLD SHOCK DOMAIN CONTAINING PROTEINSInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0140359Molecular FunctionABC-type transporter activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0007267Biological Processcell-cell signalingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06099CSDA, ZONAB; cold shock domain protein A-Transportersko02000deepkoala
Spliceosomeko03041deepkoala

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