Gene detail

Detailed information of Aala_g2433.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB4000325.1, Pre-mRNA cleavage complex 2 Pcf11, partial [Paramuricea clavata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
G3X9Z4	Pre-mRNA cleavage complex 2 protein Pcf11 OS=Mus musculus OX=10090 GN=Pcf11 PE=2 SV=1
O94913	Pre-mRNA cleavage complex 2 protein Pcf11 OS=Homo sapiens OX=9606 GN=PCF11 PE=1 SV=3
Q0WPF2	Polyadenylation and cleavage factor homolog 4 OS=Arabidopsis thaliana OX=3702 GN=PCFS4 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04818	CID	CID domain	Repeat	Interproscan
PF05699	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF06367	Drf_FH3	Diaphanous FH3 Domain	Repeat	Interproscan
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR006569	Domain	CID domain	Interproscan
IPR045154	Family	Protein PCF11-like	Interproscan
IPR008942	Homologous_superfamily	ENTH/VHS	Interproscan
IPR026630	Family	EPM2A-interacting protein 1/ZBED8-like	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR008906	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR010472	Domain	Formin, FH3 domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR051860	Family	Plasmodium Circumsporozoite Invasion Protein	Interproscan
IPR050119	Family	G-protein coupled receptor 1	Interproscan
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan

PANTHER

Gene Ontology

GO terms	Category	Description	Source
GO:0000993	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005849	Cellular Component	mRNA cleavage factor complex	Interproscan
GO:0006369	Biological Process	termination of RNA polymerase II transcription	Interproscan
GO:0006378	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0031124	Biological Process	mRNA 3'-end processing	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0003779	Molecular Function	actin binding	Interproscan
GO:0016043	Biological Process	cellular component organization	Interproscan
GO:0006955	Biological Process	immune response	Interproscan
GO:0007204	Biological Process	positive regulation of cytosolic calcium ion concentration	Interproscan
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0016493	Molecular Function	C-C chemokine receptor activity	Interproscan
GO:0019722	Biological Process	calcium-mediated signaling	Interproscan
GO:0019957	Molecular Function	C-C chemokine binding	Interproscan
GO:0060326	Biological Process	cell chemotaxis	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan