Gene detail

Detailed information of Aala_g2471.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_020618873.1, probable ATP-dependent RNA helicase DDX49 [Orbicella faveolata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q9Y6V7	Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens OX=9606 GN=DDX49 PE=1 SV=1
Q4FZF3	Probable ATP-dependent RNA helicase DDX49 OS=Mus musculus OX=10090 GN=Ddx49 PE=2 SV=1
Q9HGM5	ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp8 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF13837	Myb_DNA-bind_4	Myb/SANT-like DNA-binding domain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13202	EF-hand_5	EF hand	Domain	Interproscan
PF14716	HHH_8	Helix-hairpin-helix domain	Domain	Interproscan
PF00053	Laminin_EGF	Laminin EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR044822	Domain	Myb/SANT-like DNA-binding domain 4	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR026630	Family	EPM2A-interacting protein 1/ZBED8-like	Interproscan
IPR027421	Homologous_superfamily	DNA polymerase lambda lyase domain superfamily	Interproscan
IPR010996	Domain	DNA polymerase beta-like, N-terminal domain	Interproscan
IPR022312	Family	DNA polymerase family X	Interproscan
IPR000366	Family	GPCR fungal pheromone mating factor, STE2	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR002049	Domain	Laminin-type EGF domain	Interproscan
IPR050440	Family	Laminin/Netrin Extracellular Matrix	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan
PTHR47595	HEAT SHOCK 70 KDA PROTEIN 14	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR45913	EPM2A-INTERACTING PROTEIN 1	Interproscan
PTHR11276	DNA POLYMERASE TYPE-X FAMILY MEMBER	Interproscan
PTHR10574	NETRIN/LAMININ-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006284	Biological Process	base-excision repair	Interproscan
GO:0006303	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0004932	Molecular Function	mating-type factor pheromone receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0009887	Biological Process	animal organ morphogenesis	Interproscan
GO:0009888	Biological Process	tissue development	Interproscan