Detailed information of Aala_g2486.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_028399022.1, 40S ribosomal protein S6-like [Dendronephthya gigantea]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O01727Small ribosomal subunit protein eS6 OS=Branchiostoma floridae OX=7739 GN=RPS6 PE=3 SV=1
Q90YR8Small ribosomal subunit protein eS6 OS=Ictalurus punctatus OX=7998 GN=rps6 PE=2 SV=1
P39017Small ribosomal subunit protein eS6 OS=Xenopus laevis OX=8355 GN=rps6 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02017CIDE-NCIDE-N domainDomainInterproscan
PF17814LisH_TPLLisH-like dimerisation domainDomainInterproscan
PF03184DDE_1DDE superfamily endonucleaseFamilyInterproscan
PF03221HTH_Tnp_Tc5Tc5 transposase DNA-binding domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF14529Exo_endo_phos_2Endonuclease-reverse transcriptase DomainInterproscan
PF01092Ribosomal_S6eRibosomal protein S6eFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003508DomainCIDE-N domainInterproscan
IPR006594Conserved_siteLIS1 homology motifInterproscan
IPR006595DomainCTLH, C-terminal LisH motifInterproscan
IPR040067FamilyWD repeat-containing protein 47Interproscan
IPR004875DomainDDE superfamily endonuclease domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR050863FamilyCentromere and Transposable Element-Derived ProteinInterproscan
IPR006600DomainHTH CenpB-type DNA-binding domainInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR001377FamilySmall ribosomal subunit protein eS6Interproscan
IPR053134FamilyRNA-directed DNA polymerase homologInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR052160FamilyGypsy Retrotransposon Integrase-likeInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR052824FamilyN6-methyladenosine RNA Methylation RegulatorInterproscan
IPR000163FamilyProhibitinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12306CELL DEATH ACTIVATOR CIDEInterproscan
PTHR19863NEMITIN (NEURONAL ENRICHED MAP INTERACTING PROTEIN) HOMOLOGInterproscan
PTHR19303TRANSPOSONInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR1150240S RIBOSOMAL PROTEIN S6Interproscan
PTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINInterproscan
PTHR47266ENDONUCLEASE-RELATEDInterproscan
PTHR13585CHASCON, ISOFORM D-RELATEDInterproscan
PTHR23222PROHIBITINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006915Biological Processapoptotic processInterproscan
GO:0042981Biological Processregulation of apoptotic processInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0007005Biological Processmitochondrion organizationInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02991RP-S6e, RPS6; small subunit ribosomal protein S6e-Ribosomeko03011deepkoala

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