Detailed information of Aala_g2506.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_020605799.1, homeobox protein six1b-like [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q27350Protein sine oculis OS=Drosophila melanogaster OX=7227 GN=so PE=2 SV=1
Q6NZ04Homeobox protein six1b OS=Danio rerio OX=7955 GN=six1b PE=1 SV=1
A1YER0Homeobox protein SIX1 OS=Gorilla gorilla gorilla OX=9595 GN=SIX1 PE=3 SV=1
Gene familySubfamily
Transcription Factors FamilyHomeobox

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21692Talin_R4Talin, R4 domainDomainInterproscan
PF09141Talin_middleTalin, middle domainDomainInterproscan
PF16878SIX1_SDTranscriptional regulator, SIX1, N-terminal SD domainDomainInterproscan
PF05920Homeobox_KNHomeobox KN domainFamilyInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR049108DomainTalin, R4 domainInterproscan
IPR015224DomainTalin, centralInterproscan
IPR035964Homologous_superfamilyI/LWEQ domain superfamilyInterproscan
IPR036476Homologous_superfamilyTalin, central domain superfamilyInterproscan
IPR031701DomainHomeobox protein SIX1, N-terminal SD domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR008422DomainHomeobox KN domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46238REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR46704CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR19981TALINInterproscan
PTHR10390HOMEOBOX PROTEIN SIXInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0001726Cellular ComponentruffleInterproscan
GO:0005200Molecular Functionstructural constituent of cytoskeletonInterproscan
GO:0005925Cellular Componentfocal adhesionInterproscan
GO:0003779Molecular Functionactin bindingInterproscan
GO:0005178Molecular Functionintegrin bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan

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