Gene detail

Detailed information of Aala_g2545.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAJ7379788.1, hypothetical protein OS493_012534 [Desmophyllum pertusum]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Q96DM1	PiggyBac transposable element-derived protein 4 OS=Homo sapiens OX=9606 GN=PGBD4 PE=1 SV=3
Q03278	Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Nasonia vitripennis OX=7425 PE=4 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21744	BAHCC1-like_Tudor	BAHCC1-like, Tudor domain	Domain	Interproscan
PF05270	AbfB	Alpha-L-arabinofuranosidase B (ABFB) domain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13843	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF04177	TAP42	TAP42-like family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048924	Domain	BAHCC1-like, Tudor domain	Interproscan
IPR007934	Domain	Alpha-L-arabinofuranosidase B, arabinose-binding domain	Interproscan
IPR036195	Homologous_superfamily	Alpha-L-arabinofuranosidase B, arabinose-binding domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR029526	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR007304	Family	TAP46-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46238	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR35450	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR47272	DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan
PTHR10933	IMMUNOGLOBULIN-BINDING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046373	Biological Process	L-arabinose metabolic process	Interproscan
GO:0046556	Molecular Function	alpha-L-arabinofuranosidase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0009966	Biological Process	regulation of signal transduction	Interproscan
GO:0035303	Biological Process	regulation of dephosphorylation	Interproscan
GO:0051721	Molecular Function	protein phosphatase 2A binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10563	mutM, fpg; formamidopyrimidine-DNA glycosylase	EC:3.2.2.23 EC:4.2.99.18	DNA repair and recombination proteins	ko03400	deepkoala