Gene detail

Detailed information of Aala_g2554.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAI8508533.1, hypothetical protein Bbelb_136320 [Branchiostoma belcheri]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q96LX7	Coiled-coil domain-containing protein 17 OS=Homo sapiens OX=9606 GN=CCDC17 PE=1 SV=2
Q9DC29	ATP-binding cassette sub-family B member 6 OS=Mus musculus OX=10090 GN=Abcb6 PE=1 SV=1
Q9NP58	ATP-binding cassette sub-family B member 6 OS=Homo sapiens OX=9606 GN=ABCB6 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF07690	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF03184	DDE_1	DDE superfamily endonuclease	Family	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF03564	DUF1759	Protein of unknown function (DUF1759)	Family	Interproscan
PF02961	BAF	Barrier to autointegration factor	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR020846	Domain	Major facilitator superfamily domain	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR011701	Family	Major facilitator superfamily	Interproscan
IPR050863	Family	Centromere and Transposable Element-Derived Protein	Interproscan
IPR004875	Domain	DDE superfamily endonuclease domain	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR005312	Family	Protein of unknown function DUF1759	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR004122	Family	Barrier- to-autointegration factor, BAF	Interproscan
IPR051387	Family	Barrier-to-autointegration factor	Interproscan
IPR036617	Homologous_superfamily	Barrier-to-autointegration factor, BAF superfamily	Interproscan
IPR005819	Family	Linker histone H1/H5	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR038800	Family	Coiled-coil domain-containing protein 17	Interproscan
IPR027124	Family	SWR1-complex protein 5/Craniofacial development protein 1/2	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR23507	ZGC:174356	Interproscan
PTHR31511	PROTEIN CBG23764	Interproscan
PTHR19303	TRANSPOSON	Interproscan
PTHR47331	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR47507	BARRIER TO AUTOINTEGRATION FACTOR 2	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR33820	COILED-COIL DOMAIN-CONTAINING PROTEIN 17	Interproscan
PTHR23227	BUCENTAUR RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000786	Cellular Component	nucleosome	Interproscan
GO:0006334	Biological Process	nucleosome assembly	Interproscan
GO:0030527	Molecular Function	structural constituent of chromatin	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K21870	BANF; barrier-to-autointegration factor	-	Transporters	ko02000	deepkoala
			Translation factors	ko03012	deepkoala
			Chromosome and associated proteins	ko03036	deepkoala