Detailed information of Aala_g2564.t1 in Alatina alata

Genomic Location: :...
NR annotation: ALJ33560.1, Hlh-6, partial [Clytia hemisphaerica]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
A1Z713Intermembrane lipid transfer protein Vps13 OS=Drosophila melanogaster OX=7227 GN=Vps13 PE=1 SV=2
Q62671E3 ubiquitin-protein ligase UBR5 OS=Rattus norvegicus OX=10116 GN=Ubr5 PE=1 SV=3
Q80TP3E3 ubiquitin-protein ligase UBR5 OS=Mus musculus OX=10090 GN=Ubr5 PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilybHLH

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11547E3_UbLigase_EDDE3 ubiquitin ligase EDDDomainInterproscan
PF07690MFS_1Major Facilitator SuperfamilyFamilyInterproscan
PF00028CadherinCadherin domainDomainInterproscan
PF00010HLHHelix-loop-helix DNA-binding domainDomainInterproscan
PF19439CLEC16A_CCLEC16A C-terminalDomainInterproscan
PF02965Met_synt_B12Vitamin B12 dependent methionine synthase, activation domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR024725DomainE3 ubiquitin-protein ligase UBR5, ubiquitin-associated domainInterproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR011701FamilyMajor facilitator superfamilyInterproscan
IPR020846DomainMajor facilitator superfamily domainInterproscan
IPR026847FamilyVacuolar protein sorting-associated protein 13Interproscan
IPR002126DomainCadherin-likeInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR020894Conserved_siteCadherin conserved siteInterproscan
IPR050174FamilyProtocadherin/Cadherin-related Cell AdhesionInterproscan
IPR011598DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR036638Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR050359FamilyBasic helix-loop-helix transcription factorsInterproscan
IPR039272FamilyCLEC16A/TT9Interproscan
IPR045820DomainCLEC16A/TT9, C-terminalInterproscan
IPR004223DomainVitamin B12-dependent methionine synthase, activation domainInterproscan
IPR050554FamilyMethionine Synthase/CorrinoidInterproscan
IPR037010Homologous_superfamilyVitamin B12-dependent methionine synthase, activation domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR46276E3 UBIQUITIN-PROTEIN LIGASE UBR5Interproscan
PTHR23507ZGC:174356Interproscan
PTHR16166VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13Interproscan
PTHR24028CADHERIN-87AInterproscan
PTHR19290BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATEDInterproscan
PTHR21481UNCHARACTERIZEDInterproscan
PTHR45833METHIONINE SYNTHASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0034450Molecular Functionubiquitin-ubiquitin ligase activityInterproscan
GO:0090263Biological Processpositive regulation of canonical Wnt signaling pathwayInterproscan
GO:0043130Molecular Functionubiquitin bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0006623Biological Processprotein targeting to vacuoleInterproscan
GO:0019898Cellular Componentextrinsic component of membraneInterproscan
GO:0045053Biological Processprotein retention in Golgi apparatusInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0007423Biological Processsensory organ developmentInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0061564Biological Processaxon developmentInterproscan
GO:0070888Molecular FunctionE-box bindingInterproscan
GO:0005770Cellular Componentlate endosomeInterproscan
GO:0008333Biological Processendosome to lysosome transportInterproscan
GO:0016021Cellular ComponentmembraneInterproscan
GO:0016197Biological Processendosomal transportInterproscan
GO:0036020Cellular Componentendolysosome membraneInterproscan
GO:1901096Biological Processregulation of autophagosome maturationInterproscan
GO:0008705Molecular Functionmethionine synthase activityInterproscan
GO:0009086Biological Processmethionine biosynthetic processInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0046653Biological Processtetrahydrofolate metabolic processInterproscan
GO:0050667Biological Processhomocysteine metabolic processInterproscan

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