Gene detail

Detailed information of Aala_g2603.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB3983091.1, Hypothetical predicted protein [Paramuricea clavata]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q9NBX4	Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-C2H2
Transcription Factors Family	PC4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF14893	PNMA	PNMA	Family	Interproscan
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF12874	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF02229	PC4	Transcriptional Coactivator p15 (PC4)	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR048270	Domain	Paraneoplastic antigen Ma-like, C-terminal domain	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR003173	Domain	Transcriptional coactivator p15 (PC4), C-terminal	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR009044	Homologous_superfamily	ssDNA-binding transcriptional regulator	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR035901	Homologous_superfamily	GIY-YIG endonuclease superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19963	CCHC-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR24390	ZINC FINGER PROTEIN	Interproscan
PTHR22930	UNCHARACTERIZED	Interproscan
PTHR46585	INTEGRASE CORE DOMAIN CONTAINING PROTEIN	Interproscan
PTHR21301	REVERSE TRANSCRIPTASE	Interproscan
PTHR47018	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan