Detailed information of Aala_g2608.t1 in Alatina alata

Genomic Location: :...
NR annotation: GFS19188.1, endonuclease-reverse transcriptase [Elysia marginata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9CXE7Transmembrane emp24 domain-containing protein 5 OS=Mus musculus OX=10090 GN=Tmed5 PE=1 SV=1
Q28BQ6Transmembrane emp24 domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=tmed1 PE=2 SV=1
Q6AXN3Transmembrane emp24 domain-containing protein 5 OS=Rattus norvegicus OX=10116 GN=Tmed5 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01105EMP24_GP25Lemp24/gp25L/p24 family/GOLDDomainInterproscan
PF04937DUF659Protein of unknown function (DUF 659)FamilyInterproscan
PF12230PRP21_like_PPre-mRNA splicing factor PRP21 like proteinFamilyInterproscan
PF02210Laminin_G_2Laminin G domainDomainInterproscan
PF13359DDE_Tnp_4DDE superfamily endonucleaseDomainInterproscan
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan
PF00041fn3Fibronectin type III domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036598Homologous_superfamilyGOLD domain superfamilyInterproscan
IPR009038DomainGOLD domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR007021DomainDomain of unknown function DUF659Interproscan
IPR003656DomainZinc finger, BED-typeInterproscan
IPR045146FamilySplicing factor 3A subunit 1Interproscan
IPR022030DomainSplicing factor 3A subunit 1, conserved domainInterproscan
IPR001791DomainLaminin G domainInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR050372FamilyNeurexin-related cell adhesion and synaptic proteinInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR026103FamilyHarbinger transposase-derived nuclease, animalInterproscan
IPR027806DomainHarbinger transposase-derived nuclease domainInterproscan
IPR003961DomainFibronectin type IIIInterproscan
IPR036116Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR052065FamilyComplement and asymmetry regulatorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR32166OSJNBA0013A04.12 PROTEINInterproscan
PTHR15316SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATEDInterproscan
PTHR15036PIKACHURIN-LIKE PROTEINInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR22930UNCHARACTERIZEDInterproscan
PTHR22906PROPERDINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000381Biological Processregulation of alternative mRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0045292Biological ProcessmRNA cis splicing, via spliceosomeInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K23222HARBI1; nuclease HARBI1EC:3.1.-.-
Viral proteinsko03200deepkoala
Chromosome and associated proteinsko03036deepkoala

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