Detailed information of Aala_g2656.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB3977448.1, Retrovirus-related Pol poly from transposon [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P09523Enzymatic polyprotein OS=Figwort mosaic virus (strain DxS) OX=10650 GN=ORF V PE=3 SV=1
P03555Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) OX=10644 GN=ORF V PE=3 SV=1
Q02964Enzymatic polyprotein OS=Cauliflower mosaic virus (strain BBC) OX=31556 GN=ORF V PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13831PHD_2PHD-fingerFamilyInterproscan
PF10513EPL1Enhancer of polycomb-likeFamilyInterproscan
PF13832zf-HC5HC2H_2PHD-zinc-finger like domainDomainInterproscan
PF11831Myb_Cefpre-mRNA splicing factor componentFamilyInterproscan
PF20266Mab-21_CMab-21 protein HhH/H2TH-like domainDomainInterproscan
PF03281Mab-21Mab-21 protein nucleotidyltransferase domainDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF13650Asp_protease_2Aspartyl proteaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR034732DomainExtended PHD (ePHD) domainInterproscan
IPR050701FamilyHistone Modification RegulatorInterproscan
IPR019542DomainEnhancer of polycomb-like, N-terminalInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR051149FamilySpindly/BICDR Dynein Motor AdapterInterproscan
IPR038737FamilySplicing factor 3B subunit 1-likeInterproscan
IPR021786DomainPre-mRNA splicing factor component Cdc5p/Cef1, C-terminalInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR046906DomainMab-21-like, HhH/H2TH-like domainInterproscan
IPR046903DomainMab-21-like, nucleotidyltransferase domainInterproscan
IPR024810FamilyMAB21L/Cyclic GMP-AMP synthase-like receptorInterproscan
IPR014010DomainREJ domainInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13793PHD FINGER PROTEINSInterproscan
PTHR32123BICD FAMILY-LIKE CARGO ADAPTERInterproscan
PTHR12097SPLICING FACTOR 3B, SUBUNIT 1-RELATEDInterproscan
PTHR10656CELL FATE DETERMINING PROTEIN MAB21-RELATEDInterproscan
PTHR35317OS04G0629600 PROTEINInterproscan
PTHR37984PROTEIN CBG26694Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0070776Cellular ComponentMOZ/MORF histone acetyltransferase complexInterproscan
GO:0000245Biological Processspliceosomal complex assemblyInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0005689Cellular ComponentU12-type spliceosomal complexInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan

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