Genomic Location: :...
NR annotation: CAB4030390.1, Retrovirus-related Pol poly from transposon, partial [Paramuricea clavata]
| CDS | ||||
| Transcript |
| Protein |
| Uniprot term | Description |
|---|---|
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 |
| Q9ZT94 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 |
| P50533 | Structural maintenance of chromosomes protein 2 OS=Xenopus laevis OX=8355 GN=smc2 PE=1 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14529 | Exo_endo_phos_2 | Endonuclease-reverse transcriptase | Domain | Interproscan |
| PF00078 | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | Domain | Interproscan |
| PF00098 | zf-CCHC | Zinc knuckle | Domain | Interproscan |
| PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR043502 | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR036691 | Homologous_superfamily | Endonuclease/exonuclease/phosphatase superfamily | Interproscan |
| IPR000477 | Domain | Reverse transcriptase domain | Interproscan |
| IPR005135 | Domain | Endonuclease/exonuclease/phosphatase | Interproscan |
| IPR043128 | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| IPR051320 | Family | Viral Replication and Maturation Polyprotein | Interproscan |
| IPR014010 | Domain | REJ domain | Interproscan |
| IPR050972 | Family | Serine-aspartate repeat-containing protein | Interproscan |
| IPR036875 | Homologous_superfamily | Zinc finger, CCHC-type superfamily | Interproscan |
| IPR001878 | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR025724 | Domain | GAG-pre-integrase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43977 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 | Interproscan |
| PTHR33395 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED | Interproscan |
| PTHR33064 | POL PROTEIN | Interproscan |
| PTHR34403 | TOL-PAL SYSTEM PROTEIN TOLA | Interproscan |
| PTHR42648 | TRANSPOSASE, PUTATIVE-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity | Interproscan |
| GO:0007508 | Biological Process | larval heart development | Interproscan |
| GO:0031012 | Cellular Component | extracellular matrix | Interproscan |
| GO:0061343 | Biological Process | cell adhesion involved in heart morphogenesis | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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