Detailed information of Aala_g2665.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_022808079.1, DNA-directed RNA polymerase II subunit RPB2-like, partial [Stylophora pistillata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A5PJW8DNA-directed RNA polymerase II subunit RPB2 OS=Bos taurus OX=9913 GN=POLR2B PE=1 SV=1
P30876DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens OX=9606 GN=POLR2B PE=1 SV=1
Q8CFI7DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus OX=10090 GN=Polr2b PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF00562RNA_pol_Rpb2_6RNA polymerase Rpb2, domain 6DomainInterproscan
PF04560RNA_pol_Rpb2_7RNA polymerase Rpb2, domain 7DomainInterproscan
PF02475Met_10Met-10+ like-proteinFamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002110RepeatAnkyrin repeatInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR037033Homologous_superfamilyDNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyInterproscan
IPR007120DomainDNA-directed RNA polymerase, subunit 2, hybrid-binding domainInterproscan
IPR015712FamilyDNA-directed RNA polymerase, subunit 2Interproscan
IPR007641DomainRNA polymerase Rpb2, domain 7Interproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR030382DomainSAM-dependent methyltransferase TRM5/TYW2-typeInterproscan
IPR025792FamilytRNA (guanine(37)-N(1))-methyltransferase, eukaryoticInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR040191FamilyU3 small nucleolar RNA-associated protein 10Interproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24178MOLTING PROTEIN MLT-4Interproscan
PTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2Interproscan
PTHR45615MYOSIN HEAVY CHAIN, NON-MUSCLEInterproscan
PTHR23245TRNA METHYLTRANSFERASEInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR13457BAP28Interproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0030315Cellular ComponentT-tubuleInterproscan
GO:0036371Biological Processprotein localization to T-tubuleInterproscan
GO:0055117Biological Processregulation of cardiac muscle contractionInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0001055Molecular FunctionRNA polymerase II activityInterproscan
GO:0005665Cellular ComponentRNA polymerase II, core complexInterproscan
GO:0032549Molecular Functionribonucleoside bindingInterproscan
GO:0002939Biological ProcesstRNA N1-guanine methylationInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005759Cellular Componentmitochondrial matrixInterproscan
GO:0008175Molecular FunctiontRNA methyltransferase activityInterproscan
GO:0009019Molecular Functionobsolete tRNA (guanine-N1-)-methyltransferase activityInterproscan
GO:0030488Biological ProcesstRNA methylationInterproscan
GO:0070901Biological Processmitochondrial tRNA methylationInterproscan
GO:0052906Molecular FunctiontRNA (guanine(37)-N1)-methyltransferase activityInterproscan
GO:0000462Biological Processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0030515Molecular FunctionsnoRNA bindingInterproscan
GO:0030686Cellular Component90S preribosomeInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan
GO:0034455Cellular Componentt-UTP complexInterproscan
GO:0045943Biological Processpositive regulation of transcription by RNA polymerase IInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15429TRM5, TRMT5; tRNA (guanine37-N1)-methyltransferaseEC:2.1.1.228
Transfer RNA biogenesisko03016deepkoala

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