Detailed information of Aala_g2706.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_055882495.1, uncharacterized protein LOC129925807 [Biomphalaria glabrata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q5ZIA5Coatomer subunit beta OS=Gallus gallus OX=9031 GN=COPB1 PE=2 SV=1
A0JN39Coatomer subunit beta OS=Bos taurus OX=9913 GN=COPB1 PE=1 SV=1
P53618Coatomer subunit beta OS=Homo sapiens OX=9606 GN=COPB1 PE=1 SV=3
Gene familySubfamily
Transcription Factors FamilyCSD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14806Coatomer_b_CplaCoatomer beta subunit appendage platformDomainInterproscan
PF14893PNMAPNMAFamilyInterproscan
PF00313CSD'Cold-shock' DNA-binding domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014010DomainREJ domainInterproscan
IPR016460FamilyCoatomer beta subunit (COPB1)Interproscan
IPR029446DomainCoatomer beta subunit, appendage platform domainInterproscan
IPR011129DomainCold shock domainInterproscan
IPR048270DomainParaneoplastic antigen Ma-like, C-terminal domainInterproscan
IPR002059DomainCold-shock protein, DNA-bindingInterproscan
IPR050181FamilyCold shock domain-containing proteinInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR019844DomainCold-shock (CSD) domainInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45749-Interproscan
PTHR10635COATOMER SUBUNIT BETAInterproscan
PTHR11544COLD SHOCK DOMAIN CONTAINING PROTEINSInterproscan
PTHR46238REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0006888Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0006891Biological Processintra-Golgi vesicle-mediated transportInterproscan
GO:0030126Cellular ComponentCOPI vesicle coatInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan

TOP