Detailed information of Aala_g282.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_028517881.1, uncharacterized protein LOC110248712 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q7Z6E9E3 ubiquitin-protein ligase RBBP6 OS=Homo sapiens OX=9606 GN=RBBP6 PE=1 SV=1
P97868E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus OX=10090 GN=Rbbp6 PE=1 SV=5
O94264Uncharacterized RING finger protein P8B7.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBP8B7.15c PE=4 SV=1
Gene familySubfamily
Ubiquitin FamilyULD|UFD|DWNN
Ubiquitin FamilyE3|E3 activity RING|U-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076RRM_1RNA recognition motifDomainInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF08783DWNNDWNN domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000859DomainCUB domainInterproscan
IPR035914Homologous_superfamilySpermadhesin, CUB domain superfamilyInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR003954DomainRNA recognition motif domain, eukaryoteInterproscan
IPR034211DomainPUF60, RNA recognition motif 2Interproscan
IPR034209DomainPUF60, RNA recognition motif 1Interproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR051974FamilyPoly(U)-binding-splicing regulatorInterproscan
IPR014891DomainDWNN domainInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47330POLY(U)-BINDING-SPLICING FACTOR PUF60-B-RELATEDInterproscan
PTHR15439RETINOBLASTOMA-BINDING PROTEIN 6Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0000380Biological Processalternative mRNA splicing, via spliceosomeInterproscan
GO:0000381Biological Processregulation of alternative mRNA splicing, via spliceosomeInterproscan
GO:0006376Biological ProcessmRNA splice site recognitionInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12838PUF60; poly(U)-binding-splicing factor PUF60-Ribosome biogenesisko03009deepkoala
Spliceosomeko03041deepkoala

TOP