Gene detail

Detailed information of Aala_g293.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAJ8318418.1, hypothetical protein KUTeg_003509 [Tegillarca granosa]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P18700	Tubulin beta chain (Fragment) OS=Strongylocentrotus purpuratus OX=7668 PE=2 SV=1
P11833	Tubulin beta chain OS=Paracentrotus lividus OX=7656 PE=2 SV=1
Q27U48	Tubulin beta-1 chain OS=Glossina morsitans morsitans OX=37546 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01423	LSM	LSM domain	Domain	Interproscan
PF03953	Tubulin_C	Tubulin C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044925	Homologous_superfamily	His-Me finger superfamily	Interproscan
IPR036640	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR052840	Family	U7 snRNA-associated Sm-like	Interproscan
IPR010920	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR001163	Domain	Sm domain, eukaryotic/archaea-type	Interproscan
IPR047575	Domain	Sm domain	Interproscan
IPR001388	Family	Synaptobrevin-like	Interproscan
IPR037103	Homologous_superfamily	Tubulin/FtsZ-like, C-terminal domain	Interproscan
IPR023123	Homologous_superfamily	Tubulin, C-terminal	Interproscan
IPR018316	Domain	Tubulin/FtsZ, 2-layer sandwich domain	Interproscan
IPR008280	Homologous_superfamily	Tubulin/FtsZ, C-terminal	Interproscan
IPR002453	Family	Beta tubulin	Interproscan
IPR000217	Family	Tubulin	Interproscan
IPR039598	Family	HMG domain-containing protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31511	PROTEIN CBG23764	Interproscan
PTHR21196	U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM10	Interproscan
PTHR11588	TUBULIN	Interproscan
PTHR17609	HMG DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0006398	Biological Process	mRNA 3'-end processing by stem-loop binding and cleavage	Interproscan
GO:0016604	Cellular Component	nuclear body	Interproscan
GO:0071208	Molecular Function	histone pre-mRNA DCP binding	Interproscan
GO:0071209	Molecular Function	U7 snRNA binding	Interproscan
GO:0071254	Cellular Component	cytoplasmic U snRNP body	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005200	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005874	Cellular Component	microtubule	Interproscan
GO:0007017	Biological Process	microtubule-based process	Interproscan
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000278	Biological Process	mitotic cell cycle	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25591	LSM10; U7 snRNA-associated Sm-like protein LSm10	-	Messenger RNA biogenesis	ko03019	deepkoala