Detailed information of Aala_g30.t1 in Alatina alata

Genomic Location: :...
NR annotation: KXJ10345.1, LINE-1 reverse transcriptase-like [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9WTS8Ficolin-1 OS=Rattus norvegicus OX=10116 GN=Fcn1 PE=2 SV=2
D8VNT0Ryncolin-4 OS=Cerberus rynchops OX=46267 PE=1 SV=1
O70165Ficolin-1 OS=Mus musculus OX=10090 GN=Fcn1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF13843DDE_Tnp_1_7Transposase IS4DomainInterproscan
PF13676TIR_2TIR domainDomainInterproscan
PF01928CYTHCYTH domainDomainInterproscan
PF06470SMC_hingeSMC proteins Flexible Hinge DomainDomainInterproscan
PF12937F-box-likeF-box-likeDomainInterproscan
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF14529Exo_endo_phos_2Endonuclease-reverse transcriptase DomainInterproscan
PF13842Tnp_zf-ribbon_2DDE_Tnp_1-like zinc-ribbonDomainInterproscan
PF02377DishevelledDishevelled specific domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR052343FamilyDiverse Retrotransposon and Effector-Associated ProteinInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR029526DomainPiggyBac transposable element-derived proteinInterproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR035897Homologous_superfamilyToll/interleukin-1 receptor homology (TIR) domain superfamilyInterproscan
IPR000157DomainToll/interleukin-1 receptor homology (TIR) domainInterproscan
IPR023577DomainCYTH domainInterproscan
IPR008173FamilyAdenylyl cyclase CyaBInterproscan
IPR033469Homologous_superfamilyCYTH-like domain superfamilyInterproscan
IPR010935DomainSMCs flexible hingeInterproscan
IPR036277Homologous_superfamilySMCs flexible hinge superfamilyInterproscan
IPR001810DomainF-box domainInterproscan
IPR036047Homologous_superfamilyF-box-like domain superfamilyInterproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR032718DomainPiggyBac transposable element-derived protein 4, C-terminal zinc-ribbonInterproscan
IPR003351DomainDishevelled protein domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10971MRNA EXPORT FACTOR AND BUB3Interproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR46890NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATEDInterproscan
PTHR47272DDE_TNP_1_7 DOMAIN-CONTAINING PROTEINInterproscan
PTHR46114APPLE DOMAIN-CONTAINING PROTEINInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR46270ARMADILLO-TYPE FOLD-RELATEDInterproscan
PTHR21028SI:CH211-156B7.4Interproscan
PTHR43977STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3Interproscan
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan
PTHR33395TRANSCRIPTASE, PUTATIVE-RELATED-RELATEDInterproscan
PTHR46599PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000972Biological Processtranscription-dependent tethering of RNA polymerase II gene DNA at nuclear peripheryInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005643Cellular Componentnuclear poreInterproscan
GO:0006405Biological ProcessRNA export from nucleusInterproscan
GO:0043130Molecular Functionubiquitin bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005694Cellular ComponentchromosomeInterproscan
GO:0051276Biological Processchromosome organizationInterproscan
GO:0003690Molecular Functiondouble-stranded DNA bindingInterproscan
GO:0007064Biological Processmitotic sister chromatid cohesionInterproscan
GO:0034990Cellular Componentmitotic cohesin complexInterproscan
GO:0061775Molecular Functioncohesin loader activityInterproscan
GO:0007508Biological Processlarval heart developmentInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0061343Biological Processcell adhesion involved in heart morphogenesisInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan

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