Detailed information of Aala_g305.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAH3139976.1, unnamed protein product [Pocillopora meandrina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9WU56Pseudouridylate synthase 1 homolog OS=Mus musculus OX=10090 GN=Pus1 PE=1 SV=2
Q4KM92Pseudouridylate synthase 1 homolog OS=Rattus norvegicus OX=10116 GN=Pus1 PE=1 SV=2
Q9Y606Pseudouridylate synthase 1 homolog OS=Homo sapiens OX=9606 GN=PUS1 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00632HECTHECT-domain (ubiquitin-transferase)DomainInterproscan
PF00759Glyco_hydro_9Glycosyl hydrolase family 9RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR002395FamilyHMW kininogenInterproscan
IPR000569DomainHECT domainInterproscan
IPR050409FamilyE3 ubiquitin-protein ligaseInterproscan
IPR035983Homologous_superfamilyHECT, E3 ligase catalytic domainInterproscan
IPR020095Homologous_superfamilyPseudouridine synthase I, TruA, C-terminalInterproscan
IPR020103Homologous_superfamilyPseudouridine synthase, catalytic domain superfamilyInterproscan
IPR001406FamilyPseudouridine synthase I, TruAInterproscan
IPR012341Homologous_superfamilySix-hairpin glycosidase-like superfamilyInterproscan
IPR008928Homologous_superfamilySix-hairpin glycosidase superfamilyInterproscan
IPR001701DomainGlycoside hydrolase family 9Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37984PROTEIN CBG26694Interproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR11254HECT DOMAIN UBIQUITIN-PROTEIN LIGASEInterproscan
PTHR11142PSEUDOURIDYLATE SYNTHASEInterproscan
PTHR22298ENDO-1,4-BETA-GLUCANASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0030514Biological Processnegative regulation of BMP signaling pathwayInterproscan
GO:0030579Biological Processobsolete ubiquitin-dependent SMAD protein catabolic processInterproscan
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0009982Molecular Functionpseudouridine synthase activityInterproscan
GO:0001522Biological Processpseudouridine synthesisInterproscan
GO:0009451Biological ProcessRNA modificationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0031119Biological ProcesstRNA pseudouridine synthesisInterproscan
GO:1990481Biological ProcessmRNA pseudouridine synthesisInterproscan
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compoundsInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12592C1D, LRP1; exosome complex protein LRP1-Messenger RNA biogenesisko03019deepkoala

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